Pairwise Alignments

Query, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Pantoea sp. MT58

 Score = 86.7 bits (213), Expect = 3e-22
 Identities = 56/176 (31%), Positives = 100/176 (56%), Gaps = 4/176 (2%)

Query: 22  VEENDEKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYAFST 81
           V++ D+K++  L+  Y+  V  +V + V + D   D+  E+F KA++ L  F  + AF T
Sbjct: 14  VQKGDQKSFNLLVIRYQHKVASLVSRYVPSGD-VPDVVQESFIKAYRALDSFRGDSAFYT 72

Query: 82  WLFRIATNNCIDFIRKNRIKTMSID-SAIKIDNGDEITIDFKDKNLNPQEEAIKNQKIEI 140
           WL+RIA N   +++     +  S D  AI  +N +      K+ + NP+   + ++  +I
Sbjct: 73  WLYRIAVNTAKNYLVAQGRRPPSSDVDAIDAENFESAGA-LKEIS-NPENLMLSDELKQI 130

Query: 141 MQYVVAKLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELLYDMVK 196
           +   +  LPE  +  +TLR  + LSYEEIA  ++ P+GTV++++ RARE + + V+
Sbjct: 131 VFRTIEALPEDLRMAITLRELDGLSYEEIAVIMDCPVGTVRSRIFRAREAIDNKVQ 186