Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoD/SigA from Parabacteroides merdae CL09T00C40

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  209 bits (531), Expect = 2e-58
 Identities = 114/302 (37%), Positives = 187/302 (61%), Gaps = 21/302 (6%)

Query: 5   KITKSITNRESASLDKYLQEIGR-----------------EDLITVEEEVELAQAIKRGD 47
           ++ +S T+  +    KY + IGR                 E  +T+ E  ++ + +  G+
Sbjct: 313 EVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAEIKDINRRMSIGE 372

Query: 48  ---RRALEKLTRANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFIS 104
              RRA +++  ANLR V+S+AK+Y N+GL   DLI EGN+GL+KA +KF+  RG+KF +
Sbjct: 373 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 432

Query: 105 YAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKISKAFSKFEQENERRPSPEELADELDI 164
           YA WWIRQ+I +++A+Q+R +R+P++ + ++NK+++   +  QE  R P+PEEL + +++
Sbjct: 433 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEM 492

Query: 165 PVDKISDTLKVSGRHISVDAPFVEGEDNSLLDVLVNDDAPIADRSLMNESLAKEIDRALA 224
           P DKI   LK++   IS++ P  + ED+ L D + +            ESL +     L+
Sbjct: 493 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATRDVLS 552

Query: 225 TLTERECEIIKMFFGIGCQ-EMTLEEIGDKFGLTRERVRQIKEKAIRRLRQGTRSKLLKS 283
            LT RE ++++M FGI    + TLEE+G +F +TRER+RQI+ KA+R+LR  TRS+ L+S
Sbjct: 553 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRS 612

Query: 284 YL 285
           +L
Sbjct: 613 FL 614



 Score = 30.8 bits (68), Expect = 8e-05
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 21  YLQEIGREDLITVEEEVELAQAIKRGDRRALEKLTR--ANLRFVVSVAKQYQNQGLSLPD 78
           Y++E+G  +L+T E E+E+A+ I+ G R  +  +      +  ++S   +   +G  L D
Sbjct: 103 YMREMGTVELLTREGEIEIAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSD 162

Query: 79  LIN 81
           +++
Sbjct: 163 VLS 165