Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoD/SigA from Parabacteroides merdae CL09T00C40

Subject, 287 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  416 bits (1069), Expect = e-121
 Identities = 214/287 (74%), Positives = 249/287 (86%), Gaps = 1/287 (0%)

Query: 1   MRQLKITKSITNRESASLDKYLQEIGREDLITVEEEVELAQAIKRGDRRALEKLTRANLR 60
           MRQLKI+K ITNRES SLDKYLQEIG+ DL+T +EEV LAQ IK GD+ ALEKLT+ANLR
Sbjct: 1   MRQLKISKQITNRESQSLDKYLQEIGKVDLLTPDEEVSLAQRIKEGDQFALEKLTKANLR 60

Query: 61  FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAE 120
           FVVSVAKQYQNQGLSL DLINEGNLGLIKAA++FDETRGFKFISYAVWWIRQSILQALAE
Sbjct: 61  FVVSVAKQYQNQGLSLGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIRQSILQALAE 120

Query: 121 QSRIVRLPLNQVGSLNKISKAFSKFEQENERRPSPEELADELDIPVDKISDTLKVSGRHI 180
           QSRIVRLPLN+VGSLNKISK+FS+ EQ+ ER PSPEE+A+ L++   ++ DTLK+SGRH+
Sbjct: 121 QSRIVRLPLNRVGSLNKISKSFSELEQKFEREPSPEEIAEVLELTTAEVVDTLKISGRHV 180

Query: 181 SVDAPFVEGEDNSLLDVLVNDDAPIADRSLMNESLAKEIDRALATLTERECEIIKMFFGI 240
           SVDAPFV+GE+N LLDVL N+D    D  LMN+SL KE+ RAL+TLT+RE ++I ++FG+
Sbjct: 181 SVDAPFVQGEENRLLDVLENEDEESPDMGLMNDSLRKEVQRALSTLTKREADVITLYFGL 240

Query: 241 -GCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQGTRSKLLKSYLG 286
            G   +TLEEIG+KF LTRERVRQIKEKAIRRLR  +RSK LK YLG
Sbjct: 241 NGEHSLTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYLG 287