Pairwise Alignments

Query, 286 a.a., RNA polymerase sigma factor RpoD/SigA from Parabacteroides merdae CL09T00C40

Subject, 613 a.a., RNA polymerase sigma factor RpoD from Escherichia coli ECRC100

 Score =  219 bits (557), Expect = 2e-61
 Identities = 112/268 (41%), Positives = 181/268 (67%), Gaps = 4/268 (1%)

Query: 22  LQEIGREDLITVEEEVELAQAIKRGD---RRALEKLTRANLRFVVSVAKQYQNQGLSLPD 78
           LQ+I  E  +T+E+  ++ + +  G+   RRA +++  ANLR V+S+AK+Y N+GL   D
Sbjct: 344 LQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 403

Query: 79  LINEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGSLNKI 138
           LI EGN+GL+KA +KF+  RG+KF +YA WWIRQ+I +++A+Q+R +R+P++ + ++NK+
Sbjct: 404 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463

Query: 139 SKAFSKFEQENERRPSPEELADELDIPVDKISDTLKVSGRHISVDAPFVEGEDNSLLDVL 198
           ++   +  QE  R P+PEELA+ + +P DKI   LK++   IS++ P  + ED+ L D +
Sbjct: 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI 523

Query: 199 VNDDAPIADRSLMNESLAKEIDRALATLTERECEIIKMFFGIGCQ-EMTLEEIGDKFGLT 257
            +    +   S   ESL       LA LT RE ++++M FGI    + TLEE+G +F +T
Sbjct: 524 EDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVT 583

Query: 258 RERVRQIKEKAIRRLRQGTRSKLLKSYL 285
           RER+RQI+ KA+R+LR  +RS++L+S+L
Sbjct: 584 RERIRQIEAKALRKLRHPSRSEVLRSFL 611



 Score = 27.7 bits (60), Expect = 7e-04
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 4   LKITKSITNRESASLDKYLQEIGREDLITVEEEVELAQAIKRG 46
           L   +S   R +  +  Y++E+G  +L+T E E+++A+ I+ G
Sbjct: 84  LSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 126