Pairwise Alignments

Query, 782 a.a., BamA/TamA family outer membrane protein from Parabacteroides merdae CL09T00C40

Subject, 788 a.a., outer membrane protein assembly factor BamA from Pseudomonas fluorescens SBW25

 Score = 50.4 bits (119), Expect = 4e-10
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 38/164 (23%)

Query: 596 FVKGDIDFSKSIVLDNRNKLAFHIGIGVGYPYGNSKMLPFERSYFSGGANSVRGWSVRSL 655
           F K D      + + N   L  H  +G G  YG++  LPF  SY +GG  +VRG+   +L
Sbjct: 601 FYKLDYTGQTFLPVSNNTTLRLHTKLGYGNGYGSTDGLPFYESYTAGGEGTVRGFESGTL 660

Query: 656 GPGSMPLDSVKSFAQQI-----------GDIRLDLNLEY-------------RTKLFWKF 691
           GP S P     + A Q            G+I +    EY             RT LFW  
Sbjct: 661 GPRSTPATGTYASAGQAYYSDRDTEALGGNILITGGAEYLFPVPFIKDNKSVRTSLFW-- 718

Query: 692 EMAAFIDAGNIWT--FHKDESRPNGNFDFSRFYKEIAVSYGLGL 733
                 D G++++   +   ++  G  D S    ++A S G+G+
Sbjct: 719 ------DVGSVYSDKCYLSTTQGCGGVDLS----QMASSVGVGV 752



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 21/114 (18%)

Query: 107 VDELKRFFINKGYMNAEV-SASIDTSRVKKAV-VTYRIVPNTPYRIHNYSMDLSDPKIDS 164
           ++ L+ F++++GY+N ++ S  +  +  KK V +T  I     Y + +  +         
Sbjct: 223 LERLRSFYLDRGYINMDITSTQVSMTPDKKHVYITVNIQEGQKYTVRDVKLS-------- 274

Query: 165 IAKLKPPHRSVLASAFRTYSDDYTSLIKDSALFDRDVLDKERQRITTLLRRRGY 218
             +LK P   V A            L++   +F R ++      IT  L   GY
Sbjct: 275 -GELKVPQDQVQA----------LLLVQKGQVFSRKLMTTTSDLITRRLGNDGY 317