Pairwise Alignments

Query, 540 a.a., DNA repair protein RecN from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 553 a.a., recombination and repair protein (RefSeq) from Shewanella loihica PV-4

 Score =  344 bits (883), Expect = 4e-99
 Identities = 205/547 (37%), Positives = 321/547 (58%), Gaps = 11/547 (2%)

Query: 1   LRDFVIVQSLELELGSGFGVLTGETGAGKSILIDALQLALGSRSDSGVVREGAARCDIAA 60
           + +F IV+ LEL+  SG   +TGETGAGKSI IDAL L LG+R+D+  VR GA++ +++A
Sbjct: 7   INNFAIVRFLELDFKSGMTSITGETGAGKSIAIDALGLCLGNRADANTVRPGASKAEVSA 66

Query: 61  EF---DAPASLTPWLEEQGFPVEDGLLLRRTVDTEGRSRAWINGSAATVTQLKALADGLV 117
            F   D P +   WLE+    ++D  +LRRT+ ++GRSRA+ING+   + Q++AL   L+
Sbjct: 67  RFALNDIPLAKR-WLEDNDLELDDECILRRTIGSDGRSRAYINGNPVPLNQMRALGQQLI 125

Query: 118 DIHGQHAWQSLTRAEAVRDLLDAYAG--IDTAPAARAWAQWRQRRKALDSATEKQNSLQQ 175
            IHGQHA  ++ ++E    LLD+YA   +     + ++ +++  +K L    + Q+    
Sbjct: 126 GIHGQHAHHAMLKSEHQLTLLDSYANHKMLLEACSASYQRFKLIQKELSQLQQSQHERIA 185

Query: 176 ESERLAWQIAELDKLSPQAGEWEELNTQHSRLANAQGLLDAAQIAANALDEDDTNAA-AL 234
             + L +Q+ ELD+ +    E++E+  +H +LAN   L+ A Q     L +++  A  +L
Sbjct: 186 RKQLLQYQVEELDEFALGEEEFDEIEAEHKKLANGTALIQACQRTLYLLQDNEEGAIESL 245

Query: 235 IHRALSALQAQAHIEPQFASAIEALEAALAQVQDTVHSLHQYSRHTERDPGSLEALDQRL 294
           ++ +L   Q     +P+       L  AL QVQ++   L +Y    E DP    AL+QRL
Sbjct: 246 LNMSLDQAQELEGYDPELKGVGNMLNDALIQVQESSSELQRYLDKLELDPEHFAALEQRL 305

Query: 295 SLWVSLARRYRRTPEELAEVHAQWKTELAQIDQALD-LEALQRAERADWKTFATALQAIS 353
           S  + LAR++    ++L + H     EL+++D   + L+ + +   +  ++F    Q +S
Sbjct: 306 SKIMMLARKHHVNAKDLYQHHQALSQELSELDSDEEKLDEIAQQLESCRESFIAHAQKLS 365

Query: 354 KERQKAAPKLSKAVTATMQTLGMQGGVF--EVALLPLEEPQAHGAEQVEFRVAGHAGATP 411
           + RQ+ A +L K VT ++  L M  G F  +V   P E    +G + VEF+V  + G   
Sbjct: 366 QSRQRYAKELDKQVTRSIHELSMPKGKFIIDVQFNP-EMMSPNGCDTVEFQVTTNPGQPL 424

Query: 412 KPVGKVASGGELSRIALAISVVTSRLGQAPTLIFDEVDSGIGGAVAHTVGQLLRQLGKDR 471
           +P+ KVASGGELSRI L I V+T++    PTLIFDEVD GI G  A  VG++LR LG+  
Sbjct: 425 QPIAKVASGGELSRIGLGIQVITAKKVATPTLIFDEVDVGISGPTAAVVGKMLRALGEST 484

Query: 472 QVLAVTHLPQVAACADHHLLVSKQAVGRQTQSTVEPIATDARVRELARMLGGGEQSEISL 531
           QVL VTHLPQVA     H+ V+KQ+   QT++++ P+    R+ ELAR+LGG   +  +L
Sbjct: 485 QVLCVTHLPQVAGNGHQHMFVNKQSKAGQTETSMVPLDKGQRIEELARLLGGDVITNNTL 544

Query: 532 AHAREML 538
           A+A+E+L
Sbjct: 545 ANAKELL 551