Pairwise Alignments

Query, 204 a.a., Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 178 a.a., 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD from Sphingomonas koreensis DSMZ 15582

 Score = 82.0 bits (201), Expect = 6e-21
 Identities = 54/127 (42%), Positives = 68/127 (53%), Gaps = 8/127 (6%)

Query: 19  VRIIGGQWKRTKLPVADRPGLRPTPSRVRETLFNWLGQDLSGWRCI---DAFAGTGALGL 75
           +RII GQW+   L      G RPT  R RE LF+ L   +  +  +   D FAG+GALG 
Sbjct: 1   MRIIAGQWRGRPLAAPKGDGTRPTADRTREALFSMLASRVGSFEDLAVADLFAGSGALGF 60

Query: 76  EAASRGAVEVVLVEQDSALLANLGRITTQLKATGVRVE-RGDGVAALRQRAGQGLDAVFL 134
           EA SRGA   + VEQD A L  L     +L   GVR + R   V AL   A + LD + +
Sbjct: 61  EALSRGAASCLFVEQDRAALDALRANAEKL---GVRADIRATSVLALGP-APKPLDVILM 116

Query: 135 DPPFGDG 141
           DPP+G G
Sbjct: 117 DPPYGTG 123