Pairwise Alignments

Query, 539 a.a., Peptide chain release factor 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 532 a.a., peptide chain release factor 3 (RF-3) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  477 bits (1227), Expect = e-139
 Identities = 246/524 (46%), Positives = 342/524 (65%), Gaps = 7/524 (1%)

Query: 7   QVRRRRTFAIISHPDAGKTTLTEKLLLFSGAINIAGSVKARKAARHATSDWMEIEKQRGI 66
           +++RRRTFAII+HPDAGKT+LTEKLLLF G I +AG+VK+ K  + ATSDWMEIEKQRGI
Sbjct: 14  EIQRRRTFAIIAHPDAGKTSLTEKLLLFGGQIQVAGAVKSNKIKKTATSDWMEIEKQRGI 73

Query: 67  SVASSVMQMEYRDCVINLLDTPGHQDFSEDTYRVLTAVDAALMVIDAGNGVEPQTRRLLQ 126
           SV +SVM+ +YRD  IN+LDTPGHQDF+EDTYR LTAVD+ ++V+D   GVE QTR+L++
Sbjct: 74  SVTTSVMEFDYRDYKINILDTPGHQDFAEDTYRTLTAVDSVIIVVDGAKGVETQTRKLME 133

Query: 127 VCRARNTPILTFVNKMDREVQAPLDLMDEIERELGMTVVPFTWPVGMGKTFRGVFDRRTD 186
           VCR R TP++ FVNKMDRE + P DL+DE+E EL + V P +WP+  G  F+GV++    
Sbjct: 134 VCRMRKTPVIIFVNKMDREGKDPFDLLDELEEELMIQVRPLSWPIEQGARFKGVYNIYEK 193

Query: 187 QMRVFAAGEDRRGGDEDVLAGLDNPESLKRFGAEF-EQARDELELVAGASPAFEEDKFLA 245
           ++ ++     ++   E V   +   E  K+ G    ++ R +LEL+ G  P  + + +LA
Sbjct: 194 KLDLYQ--PSKQVVTEKVEVDIHTEELDKQIGKPLADKLRGDLELIEGVYPELDVESYLA 251

Query: 246 GQQTPMLFGSAVNNFGVREVLDALVDLAPPPGERPAIQRTVKPEETKFSGVVFKIQANMD 305
           G   P+ FGSA+NNFGV+E+L+  V++AP P    A +R VKP+E KF+G +FKI AN+D
Sbjct: 252 GDCAPVFFGSALNNFGVQELLNCFVEIAPSPRPVQAEEREVKPDEPKFTGFIFKITANID 311

Query: 306 PAHRDRIAFVRVASGHFERGMKLKVVRSGKDLRPNTVVSFLSQRRELLDEAFAGDIIGIP 365
           P HR  +AF ++ SG F R    + VR GK +R ++   F++QR+  +DEA+AGDIIG+P
Sbjct: 312 PNHRSCVAFCKICSGKFVRNAPYQHVRHGKTMRFSSPTQFMAQRKTTIDEAYAGDIIGLP 371

Query: 366 NHGVLQLGDTLTEGESLQFTGLPFFAPEIIRSVEVADPLRSKQLRAGLTQLGEEGAIQVF 425
           ++G  ++GDTLTEGE L F GLP F+PE+ + +E ADP++ KQL  G+ QL +EG  Q+F
Sbjct: 372 DNGTFKIGDTLTEGELLHFRGLPSFSPEMFKYIENADPMKQKQLAKGIDQLMDEGVAQLF 431

Query: 426 RPVAGSVLLLGAVGQLQFEVVAHRLEHEYGVKARIMNSPYQVARWVTCAPEDGGEVELKR 485
                   ++G VGQLQFEV+ +RL +EY    R        A WV    E     EL+ 
Sbjct: 432 VNQFNGRKIIGTVGQLQFEVIQYRLLNEYNASCRWEPVSLYKACWV----ESDDPAELEA 487

Query: 486 FIDANSHRVALDAVDAPTLLVDHAATLRAVEANWPKIKFHAMRE 529
           F       +A D       L D    L+  + ++  IKFH   E
Sbjct: 488 FKKRKYQYMAKDREGRDVFLADSGYVLQMAQMDFKHIKFHFTSE 531