Pairwise Alignments

Query, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 332 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (325), Expect = 8e-35
 Identities = 102/343 (29%), Positives = 161/343 (46%), Gaps = 24/343 (6%)

Query: 9   TALAAAALAVTTQGFAQSTSAYKAEYRMSLVLGT-AFPWGKSGEIWSNLVRERTQGRINI 67
           T +AA+ LAVT+   A +    +   + S V  T   P G +  +    V E   G+  +
Sbjct: 6   TLIAASILAVTSFNAAANCDPGEIVIKFSHVTNTDKHPKGIAASLLEKRVNEEMNGKACM 65

Query: 68  KLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSPQVRQLNLFSMPFLMPDFAAIDAL 127
           +++P  +L   D+  E   L  G + LA  S   +    ++  +F +PFL  D  A+D  
Sbjct: 66  QVFPNSTLYDDDKVLE--ALLNGDVQLAAPSLSKFEKFTKKYRIFDLPFLFEDVDAVDRF 123

Query: 128 TTGEVGTQLFKDIERAGAVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVGSPLFLDT 187
            +   G +L   + R G   L +  NG ++IS +K  I  PAD KGLK RV  S + +  
Sbjct: 124 QSSAKGEELKNAMTRRGVKGLEFWHNGMKQISANK-PILVPADAKGLKFRVQASDVLVAQ 182

Query: 188 FTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPTVEQKHLTLWGYVADPLIF 247
           F  +GANP +MS+A+    + ++ +DGQEN  S     K   V+         + D L+ 
Sbjct: 183 FEQIGANPQKMSFAETYGGLQTKVIDGQENTWSNIYGQKYFEVQDGTTETNHGILDYLVV 242

Query: 248 VVNKDIWASWTEAD-----RAIVKQAAIDAGKEGKALARKGLVEPGKPLIKQ-LSDMGVT 301
             +K  W     AD       I+ +  I+   E   +         + L KQ + + G  
Sbjct: 243 TSSK--WWDGLPADVRDQFAKILNEVTIERNAESNKV---------EELNKQYIIEAGGV 291

Query: 302 VTELTPEQRAEFVKVTRPVYDKWKNQIGADLVTKAEKAVAARK 344
           V  LTPEQR ++V   +PV+ K++  IGADL+   E A+AA +
Sbjct: 292 VRTLTPEQRQQWVDALKPVWQKFEKDIGADLI---EAALAANQ 331