Pairwise Alignments

Query, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 321 a.a., sialic acid-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 82/332 (24%), Positives = 146/332 (43%), Gaps = 29/332 (8%)

Query: 7   LTTALAAAALAVTTQGFAQSTSAYKAEYRMSLVLGTAFPWGKSGEIWSNLVRERTQGRIN 66
           LT + AA+  A TT       S    EY              S ++ ++ + E +QG I 
Sbjct: 12  LTLSAAASVNAATTLKMGMQASVGSVEYN-------------SAKMLADTLEEMSQGEIK 58

Query: 67  IKLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSPQVRQLNLFSMPFLMPDFAAIDA 126
           + LYP   L  GD       L  G +D+           + +     +P++  DF  +  
Sbjct: 59  LALYPSAQL--GDDRAMLQQLTLGDLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRR 116

Query: 127 LTTGEVGTQLFKD-IERAGAVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVGSPLFL 185
           +   + G  +  + +++     L    NG RE + S   + +  D KGLK+RV  +   L
Sbjct: 117 MFESDFGQGVRDEMLQKFNWRALDTWYNGTRE-TTSNRPLNSIEDFKGLKLRVPNAKQNL 175

Query: 186 DTFTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPTVEQKHLTLWGYVADPL 245
           +     GA+PT MS+++   A+ + AVDGQENPL      K   V QK+L +  ++ +  
Sbjct: 176 NYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEV-QKNLAMTHHIVNDQ 234

Query: 246 IFVVNKDIWASWTEADRAIVKQAAIDAGKEGKALARKGLVEPGKPLIKQLSDMGVTVT-- 303
           + ++++  W   ++ D+ I+++A    G       +    E    L+      G+ VT  
Sbjct: 235 MVIISESTWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAE----LVSFFKSEGINVTYP 290

Query: 304 ELTPEQRAEFVKVTRPVYDKWKNQIGADLVTK 335
           +L P     F +  +P+Y ++ + IG  +V+K
Sbjct: 291 DLEP-----FREAMQPLYKEFDSNIGQPIVSK 317