Pairwise Alignments

Query, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 324 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  109 bits (273), Expect = 8e-29
 Identities = 88/315 (27%), Positives = 142/315 (45%), Gaps = 16/315 (5%)

Query: 1   MKLRTFLTTALAAAALAVTTQGFAQSTSAYKAEYRMSLVLGTAFPWGKSGEIWSNLVRER 60
           M +R        A  LA      AQ+   +   Y  S    T   W       +  + +R
Sbjct: 1   MTIRLLTLLGATATILASALSAHAQTALKWAHVYETSEPFHTESVWA------AEEIAKR 54

Query: 61  TQGRINIKLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSPQVRQLNLFSMPFLMPD 120
           T+GR  I ++P   L  G +     GL+ G +D+ +  +   +     + +   P++  D
Sbjct: 55  TEGRYKIDVFPASQL--GKEADINQGLKLGTVDIIISGSSFAARDHAPIGVTYFPYIFRD 112

Query: 121 FAAIDALTTGEVGTQLFKDIERAGAVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVG 180
            A + A T  +V  +L    E A    +          + S   I   AD++GLK+RV  
Sbjct: 113 PAHMIAYTKSDVFKRLAAGYEEASGNHITAVTYYGTRHTTSNRPIAKCADMQGLKMRVPD 172

Query: 181 SPLFLDTFTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPTVEQKHLTLWGY 240
            P +L    A GAN T +++A+   A+ +  V+ QENPL+   A K   V QKH+ L G+
Sbjct: 173 VPAYLAMPRACGANTTPIAFAEVYLALQNGTVEAQENPLTTIEAKKFFEV-QKHIVLTGH 231

Query: 241 VADPLIFVVNKDIWASWTEADRAIVKQAAIDAGKEGKALARKGLVEPGKPLIKQLSDMGV 300
           + D L  VV+K++W+  ++AD    KQ   +  +E    A K + E  K L+    + G+
Sbjct: 232 IVDHLNTVVSKNLWSQLSDAD----KQIFTEVMQEAAVRATKIIEEREKELVATFKERGI 287

Query: 301 TVTELTPEQRAEFVK 315
            VTE+    RA+F K
Sbjct: 288 EVTEV---DRADFEK 299