Pairwise Alignments

Query, 344 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 331 a.a., TRAP-type large permease component from Sinorhizobium meliloti 1021

 Score = 86.7 bits (213), Expect = 8e-22
 Identities = 75/321 (23%), Positives = 137/321 (42%), Gaps = 15/321 (4%)

Query: 4   RTFLTTALAAAALAVTTQGFAQSTSAYKAEYRMSLVLGTAFPWGKSGEIWSNLVRERTQG 63
           RTFL    A AAL++ T    ++        R+ +V     PW  +       ++  T G
Sbjct: 6   RTFLGGVAAGAALSLATPSLVRAQET--RTLRLGIVTPPGHPWNNAALKVGEALKAETNG 63

Query: 64  RINIKLYPGVSLLQGDQTREFSGLRQGVIDLAVGSTINWSPQVRQLNLFSMPFLMPDFAA 123
           R++I ++P   L  G++      ++ G +DL    T     ++  +   + P+++   A 
Sbjct: 64  RLSISVFPAGQL--GNEAAMLQQMQSGALDLGWIMTAELGSRIPAVAAINAPWVVDSTAK 121

Query: 124 IDALTTGEVGTQLFKDIE-RAGAVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVGSP 182
           +  L    V  +L   +    G V LAWG    R + ++K  I    D+ G+K+R+  +P
Sbjct: 122 VAKLVREPVAMKLLDVLPAETGTVGLAWGITTMRVVFSAKE-IAGLDDINGMKLRINTTP 180

Query: 183 LFLDTFTALGANPTQMSWADAQPAMASRAVDGQENPLSVFLAAKLPTVEQKHLTLWGYVA 242
            + D +  LGA PT +       AM++  VDG E  L      +   V +  L +   + 
Sbjct: 181 AYRDFYQLLGAAPTPIPTPAVFDAMSNGQVDGLEADLDFSWNQRFDKVSKTMLKM-NAIF 239

Query: 243 DPLIFVVNKDIWASWTEADRAIVKQAAIDAGKEGKALARKGLVEPGKPLIKQLSDMGVTV 302
            P + + +  +W +  EADR I+ +    A  E         V     L+++ +  G+ +
Sbjct: 240 MPCVALASGRVWQTLPEADREIIARLTKSALDE----QIDATVANEPALLEKFAGAGIPI 295

Query: 303 TELTPEQR----AEFVKVTRP 319
            ++T        AE+ K+  P
Sbjct: 296 KDVTVADAGRIIAEYDKIWLP 316