Pairwise Alignments

Query, 540 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 667 a.a., cytochrome O ubiquinol oxidase from Herbaspirillum seropedicae SmR1

 Score =  435 bits (1118), Expect = e-126
 Identities = 217/515 (42%), Positives = 315/515 (61%), Gaps = 12/515 (2%)

Query: 24  WRRWVYATNHKDIGTLYLLFAFTMLMVGGVLALLIRAE---LFQPGLQLVNPELFNQLTT 80
           WR W  + +HK IG +Y++ A  ML+ G   A+++RA+    F      + P  ++Q+ T
Sbjct: 55  WRDWFTSIDHKRIGIMYIVLAIVMLLRGFADAVMMRAQQAIAFGDNAGFLPPHHYDQVFT 114

Query: 81  MHGLIMVFGAIMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLMIPAAIMLVASFFMPG 140
            HG+IM+F   MP   G  N+++PLQIGA D+AF  +NNFSFW+    A++++AS F+ G
Sbjct: 115 AHGVIMIFFVAMPLVTGLMNYVVPLQIGARDVAFPFLNNFSFWMTTFGALLVMASLFV-G 173

Query: 141 GAPAAGWTLYAPLT-LQMGPSM--DAGIFAMHILGASSIMGSINIIVTILNMRAPGMTLM 197
                GW  Y PL+ +   P +  D  I+A+ + G  +++  IN++VTI+ MRAPGM +M
Sbjct: 174 EFARTGWLAYPPLSGILYSPDVGVDYYIWALQVAGVGTLLSGINLVVTIVKMRAPGMNMM 233

Query: 198 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNPAGGGDPVMYQHIFWFFG 257
           KMP+F WT L T  L++A  PVL   + M   DR FGT+FF    GG+ +MY ++ W +G
Sbjct: 234 KMPVFTWTSLCTNVLIVAAFPVLTAVLAMLSLDRVFGTNFFTNDMGGNAMMYVNLIWIWG 293

Query: 258 HPEVYIMILPAFGIVSQVVPAFARKKLFGYASMVYATGSIAILSFVVWAHHMFTTGMPVT 317
           HPEVYI++LPAFGI S++V  F+ K+LFGY SMVYAT  I ILS++VW HH FT G   +
Sbjct: 294 HPEVYILVLPAFGIFSEIVSTFSGKRLFGYTSMVYATVVITILSYLVWLHHFFTMGSGAS 353

Query: 318 GQLFFMYSTMLIAVPTGVKIFNWIATMWKGSMTFETPMLWAVGFIFVFTIGGFTGLILSV 377
              FF  +TM+I++PTG KIFNW+ TM++G + FE PMLW +GF+  F IGG TG++L+V
Sbjct: 354 VNSFFGITTMIISIPTGAKIFNWLFTMYRGRIRFEVPMLWTIGFMVTFVIGGMTGVLLAV 413

Query: 378 APIDIQMQDTYYVVAHFHYVLVAGSLFAMFSGIYYWLPKWTGVMYSETRGKIHFWWSMIS 437
            P D  + ++ +++AHFH V++ G +F MF+GI +W PK  G   +E  GK  FW+ ++ 
Sbjct: 414 PPADFVLHNSLFLIAHFHNVIIGGVVFGMFAGINFWFPKAFGFKLNEFWGKCSFWFWLVG 473

Query: 438 FNITFFPMHFLGLAGMPRR---YADYPMQFADFNAIASVGAFGFGLAQVYFFLAVVVPAM 494
           F + F P++ LGL G+ RR   + D  +Q     A    G    G+      +AV +   
Sbjct: 474 FYLAFMPLYVLGLMGVTRRMSHFDDPSLQIWFVVAAIGAGLIALGIGSFIIQIAVSI-RD 532

Query: 495 RGKGEKAPQNPWEGAVGLEWEVPSPAPFHTFENPP 529
           R K      +PW G   LEW   SP P + F   P
Sbjct: 533 RKKLADVTGDPWNGRT-LEWSTSSPPPAYNFAFTP 566