Pairwise Alignments

Query, 540 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 552 a.a., cytochrome c oxidase polypeptide I coxA from Caulobacter crescentus NA1000

 Score =  620 bits (1599), Expect = 0.0
 Identities = 304/549 (55%), Positives = 385/549 (70%), Gaps = 25/549 (4%)

Query: 1   MSAVLDHHDAHGHDDHDHHAPTGWRRWVYATNHKDIGTLYLLFAFTMLMVGGVLALLIRA 60
           M++  D HD H HDD   H P  + RW ++TNHKDIGTLY+LFA    +VGG L+ LIR 
Sbjct: 1   MASAADTHD-HAHDDD--HKPPFFARWFFSTNHKDIGTLYILFAIMAGIVGGALSGLIRW 57

Query: 61  ELFQPGLQLVNP-------------ELFNQLTTMHGLIMVFGAIMPAFVG-FANWMIPLQ 106
           EL  PG+Q+ +                +N + T H LIM+F  +MPA +G F NW +P+ 
Sbjct: 58  ELMAPGIQVFSDTGMLAQMGIFKGKHGYNAVVTAHALIMIFFMVMPAMIGGFGNWFVPIM 117

Query: 107 IGASDMAFARMNNFSFWLMIPAAIMLVASFFMPGGAP---AAGWTLYAPLTL--QMGPSM 161
           IGA DMAF RMNN SFWL+I A I+LV S F+ GG       GWT+Y PL+     GP+M
Sbjct: 118 IGAPDMAFPRMNNISFWLLIAAWILLVLSMFVDGGPGHGFGGGWTIYPPLSTIGHKGPAM 177

Query: 162 DAGIFAMHILGASSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLA 221
           D  I ++H+ GASSI+G+IN I TI NMRAPGMTL +MP+F W+ LITA+LL+  +PVLA
Sbjct: 178 DLAILSLHLAGASSILGAINFITTIFNMRAPGMTLHRMPLFVWSVLITAFLLLLSLPVLA 237

Query: 222 GAITMTLTDRHFGTSFFNPAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIVSQVVPAFAR 281
           GAITM LTDR+FGT FF+PA GGDPVM+QH+FWFFGHPEVYI+ILP FGI+S +V  F++
Sbjct: 238 GAITMLLTDRNFGTHFFDPAAGGDPVMFQHLFWFFGHPEVYILILPGFGIISHIVSTFSK 297

Query: 282 KKLFGYASMVYATGSIAILSFVVWAHHMFTTGMPVTGQLFFMYSTMLIAVPTGVKIFNWI 341
           K +FGY +M YA  +I  + FVVWAHHM+T GM +  + +F+ +TM+IAVPTGVKIF+WI
Sbjct: 298 KPVFGYLAMAYAMVAIGFVGFVVWAHHMYTVGMSINLRAYFVAATMIIAVPTGVKIFSWI 357

Query: 342 ATMWKGSMTFETPMLWAVGFIFVFTIGGFTGLILSVAPIDIQMQDTYYVVAHFHYVLVAG 401
           ATMW GS++F+TPMLWA+GFIF+FT+GG TG++LS A ID  + DTYYVVAHFHYVL  G
Sbjct: 358 ATMWGGSLSFKTPMLWAIGFIFLFTVGGVTGVVLSNAGIDYTLHDTYYVVAHFHYVLSLG 417

Query: 402 SLFAMFSGIYYWLPKWTGVMYSETRGKIHFWWSMISFNITFFPMHFLGLAGMPRRYADYP 461
           ++FA+F+G YYW  K  GV Y+E  G  HFW   I  N+ FFP HFLGL GMPRRY DYP
Sbjct: 418 AVFAIFAGFYYWFEKMWGVKYNEFLGAAHFWIMFIGVNLIFFPQHFLGLQGMPRRYVDYP 477

Query: 462 MQFADFNAIASVGAFGFGLAQVYFFLAVVVPAMRGKGEKAPQNPW-EGAVGLEWEVPSPA 520
             F  +N +++VG     +    F L ++  A+R +  KA  NPW EGA  LEW + SP 
Sbjct: 478 DAFTLWNYVSTVGYMITVVGVGVFMLVLIEAAIRRR--KAEANPWGEGATTLEWTLSSPP 535

Query: 521 PFHTFENPP 529
           PFH F  PP
Sbjct: 536 PFHQFSEPP 544