Pairwise Alignments

Query, 344 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 337 a.a., putative TIM-barrel protein, nifR3 family from Pseudomonas stutzeri RCH2

 Score =  343 bits (881), Expect = 3e-99
 Identities = 181/316 (57%), Positives = 224/316 (70%), Gaps = 7/316 (2%)

Query: 1   MQLGAFTLPNALFVAPMAGVTDRPFRKLCKRLGAGYAVSEMVTSRPDLQDSLKTSRRANH 60
           +++G +TL N L +APMAGVTD+PFR+LC+R GA   VSEM+TS   L +S K+  R  H
Sbjct: 4   VRIGPYTLTNPLILAPMAGVTDQPFRQLCRRFGAALVVSEMLTSDMRLWNSRKSRLRMPH 63

Query: 61  EGEAAPISVQIAGTDAQMMADAARYNIDRGAQIIDINMGCPAKKVCNKWAGSALMQDEAL 120
             E  P SVQIAG D QM+ADAAR N++ GAQIIDINMGCPAKKVCNK AGSALM+DE L
Sbjct: 64  ADEPEPRSVQIAGGDPQMLADAARRNVELGAQIIDINMGCPAKKVCNKAAGSALMRDERL 123

Query: 121 AIEIVQAVVAACEPHGVPVTLKMRTGWCASVRNAPTLALAAEAAGVQMLTVHGRTREQGY 180
             EI+ AVV A +   VPVTLK+RTGW    +N  T+A  AE AG+  L VHGRTR   Y
Sbjct: 124 VGEILDAVVGAVD---VPVTLKIRTGWDRQNKNGLTVARIAEQAGIAALAVHGRTRADLY 180

Query: 181 KGQAEHDTVAHIKSRVRIPVVANGDIDSPEQAREVLRRTGADAIMVGRAAQGRPWIFREI 240
            G+AE+DT+A IK  V IPV ANGDIDSP++A +VLR TG D +++GRAAQGRPWIFRE+
Sbjct: 181 TGEAEYDTIAAIKQAVSIPVFANGDIDSPQKAAQVLRATGVDGLLIGRAAQGRPWIFREV 240

Query: 241 AHFLATGEHLPPPDLADVRVWLLDHLHDHYDLYGEDTGVRSARKHLGWYAQSLPLPPGAA 300
            H+L TGE L  P L ++   LL+H+   ++ YGE  GVR ARKH+GWY  +LP     A
Sbjct: 241 EHYLRTGELLAAPTLEEIEDTLLEHVQALHEFYGEVMGVRIARKHVGWYLATLP----GA 296

Query: 301 ALFRSRVNAVTTVEAQ 316
             FR+R N +   +AQ
Sbjct: 297 RDFRARFNHLEDRDAQ 312