Pairwise Alignments

Query, 344 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 334 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 from Synechococcus elongatus PCC 7942

 Score =  192 bits (489), Expect = 8e-54
 Identities = 123/297 (41%), Positives = 163/297 (54%), Gaps = 15/297 (5%)

Query: 1   MQLGAFTLPNALFVAPMAGVTDRPFRKLCKRLGAGYAVSEMVTSRPDLQDSLKTSRRANH 60
           +Q+G+  L + +  +P+AGV+DR FR+L +R  A  ++     +   LQ  L    R   
Sbjct: 19  LQVGSLILHSRVLQSPLAGVSDRSFRQLVRR-SAPQSLIFAEMAHAGLQ--LAGRDRWEF 75

Query: 61  EGEAAPISVQIAGTDAQMMADAARYNIDRGAQIIDINMGCPAKKVCNKWAGSALMQDEAL 120
                PI  Q+ G     +A AA+     GA  ID+NMGCP  KV  K  GSAL+++  L
Sbjct: 76  LPHEQPIGAQLFGDQPATLAAAAQQAEAAGAVCIDLNMGCPVSKVTRKRGGSALLREPEL 135

Query: 121 AIEIVQAVVAACEPHGVPVTLKMRTGWCASVRNAPTLALAAEAAGVQMLTVHGRTREQGY 180
           AI IVQAV AA     +PVT+K R GW          A   EAAG Q+LT+HGR+R QGY
Sbjct: 136 AIAIVQAVAAAVS---IPVTVKTRLGW--EQVTILDFAQQLEAAGAQLLTLHGRSRSQGY 190

Query: 181 KGQAEHDTVAHIKSRVRIPVVANGDIDSPEQAREVLRRTGADAIMVGRAAQGRPWIFREI 240
            GQA+ + +  +KSR+ IPV+ANGDI+SP  A   L++TGAD +M GR + G P +   I
Sbjct: 191 SGQADWNWITRVKSRLSIPVIANGDINSPADAIACLQQTGADGVMCGRGSLGNPGLVGAI 250

Query: 241 AHFLATGEHLPPPDLADVRVWLLDHLHDHYDLYGED---TGVRSARKHLGWYAQSLP 294
              L TGE  P  +L D     L    +H  L  ED    G+  ARKHLGWY    P
Sbjct: 251 DRSLKTGEQTPELELRD----RLQLAREHLLLLWEDKGAAGLLQARKHLGWYLADQP 303