Pairwise Alignments

Query, 344 a.a., tRNA dihydrouridine synthase B (EC 1.-.-.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 322 a.a., nifR3 family TIM-barrel protein (RefSeq) from Shewanella loihica PV-4

 Score =  331 bits (849), Expect = 1e-95
 Identities = 180/326 (55%), Positives = 219/326 (67%), Gaps = 8/326 (2%)

Query: 1   MQLGAFTLPNALFVAPMAGVTDRPFRKLCKRLGAGYAVSEMVTSRPDLQDSLKTSRRANH 60
           MQ+G + L N L VAPMAGVTD+PFR LC R GA  AVSEM++S P++ D+ K+ +R  H
Sbjct: 1   MQIGPYQLKNQLIVAPMAGVTDQPFRNLCLRYGAALAVSEMLSSNPEVWDTDKSRQRMAH 60

Query: 61  EGEAAPISVQIAGTDAQMMADAARYNIDRGAQIIDINMGCPAKKVCNKWAGSALMQDEAL 120
            GE    SVQIAG D  MMA AA  N+ +GAQIIDINMGCPAKKV  K AGSAL+Q   L
Sbjct: 61  AGEDGIRSVQIAGADPDMMAHAALVNVQQGAQIIDINMGCPAKKVNKKLAGSALLQQPEL 120

Query: 121 AIEIVQAVVAACEPHGVPVTLKMRTGWCASVRNAPTLALAAEAAGVQMLTVHGRTREQGY 180
              I+QAVVAA +   VPVTLK+RTGW    RN   +A  A+  G+  L VHGRTR+  Y
Sbjct: 121 VKAILQAVVAAVD---VPVTLKIRTGWAPEHRNGVHIAQIAQDCGIASLAVHGRTRQCMY 177

Query: 181 KGQAEHDTVAHIKSRVRIPVVANGDIDSPEQAREVLRRTGADAIMVGRAAQGRPWIFREI 240
           KG AE+DT+  IK  V IPVVANGDI +PE+AR VL  TGADA+M+GR AQGRPW+FREI
Sbjct: 178 KGDAEYDTIRAIKQNVSIPVVANGDICTPEKARSVLDYTGADAVMIGRGAQGRPWLFREI 237

Query: 241 AHFLATGEHLPPPDLADVRVWLLDHLHDHYDLYGEDTGVRSARKHLGWYAQSLPLPPGAA 300
            H+L TG  L P ++ + R  +L+HL + Y LYGE  G+R ARKH+GWY     L   A 
Sbjct: 238 QHYLETGNKLAPIEVDEKRQVMLEHLKNLYALYGEYKGLRIARKHVGWY-----LDQEAQ 292

Query: 301 ALFRSRVNAVTTVEAQLRCVSESLDE 326
             FR+  N + TVE Q   +    DE
Sbjct: 293 RSFRADFNRLETVEEQRSMLERYFDE 318