Pairwise Alignments

Query, 306 a.a., Tyrosine recombinase XerD from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 305 a.a., site-specific tyrosine recombinase XerD from Rhodanobacter denitrificans MT42

 Score =  284 bits (726), Expect = 2e-81
 Identities = 152/303 (50%), Positives = 198/303 (65%), Gaps = 7/303 (2%)

Query: 5   ALASASEGIAGAFIDSLWLEEGLSRNTLDAYRRDLVLLGQWLAGHGKTLPETSEADLNQY 64
           ++A A +    AF++ +W E+GL+  TL+AYRRDL  L  WLA  G+ L      D++ Y
Sbjct: 9   SIAEADQRSIAAFVERVWSEDGLADRTLEAYRRDLAALAGWLAARGRDLRSARREDISAY 68

Query: 65  FSDRHAETRATTANRRLTVFKRYFRWALRERVIQVDPTLRLVPARQPLRVPKTMSEAQVE 124
              + A  R+    RR + F+RY+ +  R      DPTL +   + P  +PK ++E ++E
Sbjct: 69  HGAQPAAVRSIA--RRQSAFRRYYAFLARSEPGFADPTLLIERPKLPRSLPKALAEREIE 126

Query: 125 ALLNAPDVGTPLGLRDRCMLELIYASGLRVSELVTLKTWHVGMNEHVLRITGKGNKERLV 184
            LL APD GT LGLRDR MLEL+YASGLRVSELV L    +   + VLR+TGKG K+RLV
Sbjct: 127 GLLGAPDTGTTLGLRDRAMLELMYASGLRVSELVELPLAALNPRQGVLRVTGKGGKDRLV 186

Query: 185 PFGQLAGQWLQRYLGQARVEILNGQQSEDLFVTSRGARAGEAMTRAMFWQLVKKYAAQAG 244
           P G+ A   +  YL +AR  +  G+Q   LF++ R    GE MTR MFW LVK+YA + G
Sbjct: 187 PVGEEALARIGTYLIEARPALAKGRQPPALFLSQR----GEGMTRQMFWTLVKRYALKVG 242

Query: 245 IT-SPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKSIVAQHH 303
           I    +SPH LRH+FATHLLNHGADLRA+QMLLGH+ +STT IYT VA+E LK + AQHH
Sbjct: 243 INPKRISPHVLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAKEGLKRLHAQHH 302

Query: 304 PRG 306
           PRG
Sbjct: 303 PRG 305