Pairwise Alignments

Query, 324 a.a., TRAP transporter solute receptor, unknown substrate 5 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

 Score = 69.7 bits (169), Expect = 1e-16
 Identities = 73/279 (26%), Positives = 118/279 (42%), Gaps = 16/279 (5%)

Query: 47  ANDVDKATGGKLKITVHAGASLFKAPEIKRAVQGGQAQIGEILLAAYQNEWQMFGADGLP 106
           A +V KA+GGKLK+   A ASL    +++ A+ GG  ++     A      +       P
Sbjct: 54  AEEVAKASGGKLKVRTFASASLGSDDQMQNALIGGAQEMMVGSTATLVGISKEMAVWDTP 113

Query: 107 FLATS--YADSMKLYKAQKPILEKKLAEQGMT-LLYTVAWPPQGIYSKKPVASAADLKGS 163
           FL T    AD +      + +++ KL E+G+  L+Y          S +P+    D  G 
Sbjct: 114 FLFTDPRQADQVLDGPVGRQVMD-KLEEKGLVGLVYWENGFRNVTNSARPIEKLEDFNGV 172

Query: 164 KWRAY-SPATSRIAELVGAQPVTVQAAELSQALATGVVESNMTSGATGVDSKLYEHLKYY 222
           K R   +P      + +GA  V +  +EL  AL T  V+       T + SK YE  KY 
Sbjct: 173 KLRVMPNPVFIDTFKRMGANAVPLPFSELFTALETKAVDGQENPFNTILSSKFYEVQKYL 232

Query: 223 YDVQAWLPKNAIIMNKRAFDALDKPTQDAVLKAGAEAEARGWAASQKVNTDTLAILKANG 282
                      + ++KR +D L    Q  +++A  +A       +++  +  LA LK  G
Sbjct: 233 SVTNHVYSPWIVTVSKRWWDGLSATEQGILMEAAEKARDAEREDTRREASQALAALKERG 292

Query: 283 MAVEAPSAALKADMQKVGETMVKEWLEKAGPEGQAMLDA 321
           M +            +V    ++   EKA P  Q ++DA
Sbjct: 293 MQI-----------NEVSPDEIQRMREKAQPAIQTVIDA 320