Pairwise Alignments

Query, 324 a.a., TRAP transporter solute receptor, unknown substrate 5 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 336 a.a., periplasmic binding protein from Sinorhizobium meliloti 1021

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 79/328 (24%), Positives = 124/328 (37%), Gaps = 10/328 (3%)

Query: 1   MKRRLFSLSVAAATMAMSLPALAQTK---WDLPAAYPATNFHTVNLTAFANDVDKATGGK 57
           M RR   L   A  +  S+   A      + L    P T+   + L   A+ + + TGG+
Sbjct: 3   MTRRTMLLGTGAVALGASIRTKAHAADFTYKLANNLPVTHPLNIRLKEAADKILEETGGR 62

Query: 58  LKITVHAGASLFKAPEIKRAVQGGQAQIGEILLAAYQNEWQMFGADGLPFLATSYADSMK 117
           LKI +   + L    E    ++ G  +   +               G+ F    Y    K
Sbjct: 63  LKINIFPSSQLGNDTETLSQLRNGATEFFSLSPLILSTLVPNAAISGIGFAFPDYDTVWK 122

Query: 118 LYKAQKPILEKKLAEQGMTLLYTVAWPP---QGIYSKKPVASAADLKGSKWRAY-SPATS 173
               +     +   E+   +     W     Q   S KP+ +  DLKG K R   SP   
Sbjct: 123 AMDGELGAYARGEIEKKGLVPMEKIWDNGFRQITSSNKPINTPEDLKGFKIRVPPSPLWQ 182

Query: 174 RIAELVGAQPVTVQAAELSQALATGVVESNMTSGATGVDSKLYEHLKYYYDVQAWLPKNA 233
            +    GA P T+  AE+  AL+TG V+      A    +KLYE  K+            
Sbjct: 183 SMFTAFGAAPTTINFAEVYTALSTGTVDGQENPLAIASTAKLYEVQKHCAMTNHMWDGFW 242

Query: 234 IIMNKRAFDALDKPTQDAVLKAGAEAEARGWAASQKVNTDTLAILKANGMAVEAP-SAAL 292
           ++ NK+A++ L +  ++   K   E+       + KVN      L  +GM    P  AA 
Sbjct: 243 MLANKQAWETLPEDIREIAAKHLNESAIAQRTDTAKVNDTVREQLTQSGMTFTDPDKAAF 302

Query: 293 KADMQKVGETMVKEWLEKAGPEGQAMLD 320
           +  ++  G     EW  K G E  A+L+
Sbjct: 303 RETLRSAG--FYAEWKGKFGDEAWAILE 328