Pairwise Alignments

Query, 324 a.a., TRAP transporter solute receptor, unknown substrate 5 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 330 a.a., substrate-binding protein from Sinorhizobium meliloti 1021

 Score = 74.3 bits (181), Expect = 4e-18
 Identities = 85/307 (27%), Positives = 136/307 (44%), Gaps = 23/307 (7%)

Query: 10  VAAATMAMSLPALAQTKWDLPAAYPAT--NFHTVNLTAFANDVDKATGGKLKITVHAGAS 67
           VA A +  +L A A +  +L  A+     +  TV     A  +  ATGG++ +TV+  + 
Sbjct: 10  VAGAMLGAALLAGAASATELRYAHVGAEGDIQTVYAAQAAEGIAAATGGEVTVTVYPASQ 69

Query: 68  LFKAPEIKRAVQGGQAQIGE---ILLAAYQNEWQMFGA-----DGLPFLATSYADSMKLY 119
           L    E+   V+ G   +G      LA    E  +F A     DG   LA +   S    
Sbjct: 70  LGGVAEMVDGVRMGSISMGHHDFASLARLVPEVAVFNAPFIYRDGAHALAATDPQSSPAL 129

Query: 120 KAQKPILEKKLAEQGMTLLYTVAWPPQGIYSKKPVASAADLKGSKWRAYS-PATSRIAEL 178
           +A    + +KL  QG+ ++  +    + I S  PV + ADL G  +RA        + + 
Sbjct: 130 QA----INEKLIAQGVRIVGRIYRGDRHISSNFPVKTPADLAGKPFRAVPLELWVSMVKG 185

Query: 179 VGAQPVTVQAAELSQALATGVV---ESNMTSGATGVDSKLYEHLKYYYDVQAWLPKNAII 235
            GA P  V+ AEL  AL TGVV   E+ +T  A+   +++  HL     ++A L   A+ 
Sbjct: 186 FGAIPTPVEVAELPTALMTGVVVGQENPLTRIASNNLNEVQSHLSMTGHMRAVL---AVF 242

Query: 236 MNKRAFDALDKPTQDAVLKAGAEAEARGWAASQKVNTDTLAILKANGMAV--EAPSAALK 293
           +N+  +  L +  + A+ K   E   +    + +   D +  LK  GM V  EA    + 
Sbjct: 243 INEEVWQGLSEEQRTALTKVLDEEAQKSLKMATESEADLVKELKGRGMTVITEAEGLDVA 302

Query: 294 ADMQKVG 300
           A  +KVG
Sbjct: 303 AFREKVG 309