Pairwise Alignments

Query, 618 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 598 a.a., AMP-dependent synthetase and ligase (RefSeq) from Shewanella loihica PV-4

 Score =  328 bits (840), Expect = 5e-94
 Identities = 199/589 (33%), Positives = 318/589 (53%), Gaps = 12/589 (2%)

Query: 32  KERGPAIWMRQKDFGI---WRSWTWDQTGTAVREIAHGLMALGFEARETASILSNTTVEW 88
           ++RG AI +  + +G+   W+  +W +      +IA  L+A GF A++  +ILS    +W
Sbjct: 17  QQRGDAIAL--EGYGLSAPWQQISWRRFDEIGDQIAKALIASGFAAQDKVAILSQNCPQW 74

Query: 89  VLCDLAVLSAGGVANGIYPTDAAEQVQYLCDDSATTVLFVEDDEQLDKALEVRAHLPRLK 148
              D+ VL A  V   IYPT   EQ +Y+ DD+   ++FV D EQ   A E+ A  P L 
Sbjct: 75  TCADVGVLKAKAVVVPIYPTSTLEQARYIIDDAQAKLIFVGDAEQYRMARELLAICPSLT 134

Query: 149 KIVVVDMEGLRDLHDPQVISLAALREMGRAHLAQHPGLVEVRVAAVKPEDLAILVYTSGT 208
           +IVV D E      D  V   + L +    H  +    +  R+A +  +DL  L+YTSGT
Sbjct: 135 QIVVFDAEVALKQEDTAVHFDSLLTQ---THSPEVDAELAHRLANLALDDLLTLIYTSGT 191

Query: 209 TGRPKGAMHSHQGLVYTVRGYNTLIARDENDECMCFLPLCHIAERMGGEYFSLYTGAKLN 268
           TG PKG M  ++ +   +R ++T++     D  + FLPL H+ ER G  ++ L  G    
Sbjct: 192 TGDPKGVMLDYRNIASVIRQHDTILPFTPGDVSLAFLPLSHVFER-GWSFYVLCRGGHNV 250

Query: 269 FVENPETVPENVREIAPTVFTAVPRVWEKFYSGVMIALKEASQLQQAAYAWAIGVGQKVA 328
           ++++P TV E + +I P     VPR  EK YS V   + +A   ++  +AWA+ VG++  
Sbjct: 251 YLKDPMTVKEAIVDIRPHTLCVVPRFLEKVYSAVQDKVNKAPDTRKKLFAWAMSVGERQF 310

Query: 329 DRVMAGQPVPGGLRLQFRLARLLVLDNVRKLIGIHRARFLVTGAAPISPDLVRWYLALGV 388
           +           L+ Q++LA  LV   +++++G  R +F+  G A +  ++  ++  + +
Sbjct: 311 EVSQGRAKASWWLKTQWKLAHKLVYSKLQQVLG-GRLKFMPCGGAALDQNVASFFHGIDI 369

Query: 389 PMLEVWGMTETCGASTGIPAARIKPGSIGPAATYNEVRLDPQTGEILVRGPNVFMGYLNL 448
           P+L  +GMTET    T         GS G      E++L  +  EILVRG  V  GY N 
Sbjct: 370 PVLCGYGMTETTATVTCNTLDNRVAGSNGKTLPEVEIKLG-KDNEILVRGDTVMRGYYNR 428

Query: 449 PEKTAETIDTDGWLHTGDVGQVDEEGFFRITDRMKDIIITAGGKNITPSELENELKFSPY 508
           P++TA++ + DGWL TGD GQ+DE+G   ITDR+K+++ T+ GK I P  +E ++   P+
Sbjct: 429 PQETADSFE-DGWLKTGDAGQIDEQGNLFITDRIKELMKTSNGKYIAPQRVEGKVGCCPF 487

Query: 509 VTDAVVIGDKRPYLTVIIMIDQENVEKYAQDNDVPFSNYASLTRSPEVQSLIQAEIDRVN 568
           +    VI D + Y+T +I+   E++E +A++  + + +   L R   V    +  +  + 
Sbjct: 488 IEQVAVIADAKNYVTALIVPAFESLEAWAEEKGLHYESPMELLRHSHVIEHFEQRLKHLQ 547

Query: 569 KKFARVEQIKKFFLLDTQLSAEDEELTPTMKLKRKLVQQKYADQIEAMY 617
           ++ A  E+IKKF LL    S E   LTPTMKL+RK++  KYA +I AMY
Sbjct: 548 QELAGFEKIKKFTLLPEAFSMEAGLLTPTMKLRRKMIYHKYATEINAMY 596