Pairwise Alignments
Query, 1067 a.a., TPR repeat from Hydrogenophaga sp. GW460-11-11-14-LB1
Subject, 933 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H
Score = 104 bits (259), Expect = 3e-26
Identities = 130/552 (23%), Positives = 210/552 (38%), Gaps = 14/552 (2%)
Query: 416 NSLADVTRLITRHQLDNAQRRADALLSRQAQEGTQTALQSKTAASLATAFAEAGHLQQAK 475
N AD R +L L A +G L + A + A A A ++
Sbjct: 340 NKTADAVRAAALLKLGRDDESYRLLRPLAAGDGETADLYAMAAVAAQGAAAMA----DSE 395
Query: 476 TWWQRAIELNTVDSVARCGLAEILKELGDLPAARALYEDTLQSHPQDTVARNGLAEVLKE 535
++Q+A+ L D L + GD A + D A L L +
Sbjct: 396 GYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGDDKKALLLLFSSLLQ 455
Query: 536 LGDLAAARAQYENTLQSHPQNVVACNGLANVLKELGDLPAARSQYENTLQRHPQDVFARS 595
D A A +T + +P + GD AR+ +E +++ P A
Sbjct: 456 KKDFDKAEALAGDTKRKYPDRAWGWTMDGMIQASRGDTAMARAAFETAVRKEPTAGDAVR 515
Query: 596 GLAEVLKELGDLPAARTQYENTLKSHPRDVVASCGLAEVLKELGDLPAAHVQYENTLQSH 655
LA + GD AR E L+++ D + A V + DL A L+
Sbjct: 516 NLALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAVANKRNDLVAVEKWLRQALERD 575
Query: 656 PQNVFARNGLAEVLKELGDLPAARAQYESTLQSHPQN--VVASCGLAEVLKELGDLPAAR 713
P N+ A + LA +L AA + L+ P V+ + G A++L +GD AA
Sbjct: 576 PANMEAASNLASLLTSTSRPQAAIIVAQDALRISPDTPAVMEALGKAQLL--IGDYTAAA 633
Query: 714 AQYENTLKSHPQNVVTRNGLAEILKELGDLPAAQELYENTLQSHPKNVFARNGLAELLKE 773
+ P + T LA L D P +E E+ ++ P +V +R LA ++ +
Sbjct: 634 DVLRRAVAIKPSGL-TYYLLATAYLNLNDPPRLKEALESVVKLQPDHVDSRVMLATMIVD 692
Query: 774 QGDLPAARAQYENTLQSHPQNVVTSCGLAEVLKELGDLPAARAQYENTV---QSHPQNVV 830
G L A+ E P + A L + +A E ++ + P+N+V
Sbjct: 693 GGSLSDAKTAVEGVTTDFPGDPRAQEVRARYLAKAEGPASAITFLEASLTDPNTRPRNLV 752
Query: 831 ARNGLANVLKELGDLPAARAQYENTLQSHSQNVVARNGLANVLKELGDLPAARTQYENTL 890
LA+ E GD A + E+ + + + R LA L A+T E L
Sbjct: 753 ML--LASAYNEKGDGAKASSLLEDWVAKNPDDYPGRLSLATQQIAANQLEKAKTTLEKGL 810
Query: 891 QSHPQDVVARNGLANVLRRMGAHAEAKALLSGWAQAKGRQRLLDGVVFALACLPDASDEA 950
+ P D +ARN LA V+ R+G + A + ++ G Q L + + EA
Sbjct: 811 ERVPNDWIARNNLAEVMLRLGQTSAAYDQIVIARRSGGPQPALLDTEGQILLKMGKASEA 870
Query: 951 LKVLQALQADTN 962
+++L+ D N
Sbjct: 871 VEILRLATIDRN 882
Score = 62.8 bits (151), Expect = 1e-13
Identities = 105/448 (23%), Positives = 159/448 (35%), Gaps = 39/448 (8%)
Query: 480 RAIELNTVDSVARCGLAEILKELGDLPAARALYEDTLQSHPQDTVARNGLAEVLKELGDL 539
+A++++ D A G A+I G AARAL + P D A+ D
Sbjct: 161 KALDIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTALSANDP 220
Query: 540 AAARAQYENTLQSHPQNVVACNGLANVLKELGDLPAARSQYENTL---QRHPQDVFARSG 596
AAA + P N + LA E G AR L HP ++ R
Sbjct: 221 AAAEGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIPAHPWALYLRG- 279
Query: 597 LAEVLKELGDLPAARTQYENTLKSHPRDVVASCGLAEVLKELGDLPAAHVQYENTLQSHP 656
L A RT N + + +D+ A+ LA+ L+ L A V+Y
Sbjct: 280 ----------LTAYRT---NDMTAADKDLTAALALAKTLRPAIFL-AGVVKYNIGEYEQA 325
Query: 657 QNVFARNGLAEVL-KELGDLPAARAQYESTLQSHPQNVVASCGLAEVLKELGDLPAARA- 714
+ A GL E K A RA L ++ LA E DL A A
Sbjct: 326 SRLLA--GLTETEGKSNKTADAVRAAALLKLGRDDESYRLLRPLAAGDGETADLYAMAAV 383
Query: 715 -------------QYENTLKSHPQNVVTRNGLAEILKELGDLPAAQELYENTLQSHPKNV 761
Y+ + P + L + GD A ++ + +
Sbjct: 384 AAQGAAAMADSEGYYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGDDK 443
Query: 762 FARNGLAELLKEQGDLPAARAQYENTLQSHPQNV--VTSCGLAEVLKELGDLPAARAQYE 819
A L L ++ D A A +T + +P T G+ + + GD ARA +E
Sbjct: 444 KALLLLFSSLLQKKDFDKAEALAGDTKRKYPDRAWGWTMDGMIQASR--GDTAMARAAFE 501
Query: 820 NTVQSHPQNVVARNGLANVLKELGDLPAARAQYENTLQSHSQNVVARNGLANVLKELGDL 879
V+ P A LA + GD AR E L++++ + A V + DL
Sbjct: 502 TAVRKEPTAGDAVRNLALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAVANKRNDL 561
Query: 880 PAARTQYENTLQSHPQDVVARNGLANVL 907
A L+ P ++ A + LA++L
Sbjct: 562 VAVEKWLRQALERDPANMEAASNLASLL 589
Score = 43.9 bits (102), Expect = 6e-08
Identities = 81/343 (23%), Positives = 124/343 (36%), Gaps = 45/343 (13%)
Query: 673 GDLPAARAQYESTLQSHPQNVVASCGLAEVLKELGDLPAARAQYENTLKSHPQNVVTRNG 732
GD AA + L++ P N A + E+ GD+ + +
Sbjct: 49 GDQKAALIHVSNALKAAPDNRDAKILMGEITLSGGDVWSGEKLLKEVRDGGAPAETWLRP 108
Query: 733 LAE--ILKELGD--LPAAQELYENTLQSHPKNVFARNGLAELLKEQGDLPAARAQYENTL 788
LA+ IL++ D L A+ + E L K + GLA L +G AAR + L
Sbjct: 109 LAKSLILQQKFDEALTLARSIPETELVGAVKTI---EGLA--LFGKGQDGAARLALDKAL 163
Query: 789 QSHPQNVVTSCGLAEVLKELGDLPAARAQYENTVQSHPQNVVARNGLANVLKELGDLPAA 848
P + G A++ G AARA + P +V A+ D AA
Sbjct: 164 DIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTALSANDPAAA 223
Query: 849 RAQYENTLQSHSQNVVARNGLANVLKELG--------------DLPA--------ARTQY 886
+ N + R LA E G D+PA T Y
Sbjct: 224 EGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIPAHPWALYLRGLTAY 283
Query: 887 E-NTLQSHPQDVVARNGLANVLR-----------RMGAHAEAKALLSGWAQAKGRQRLLD 934
N + + +D+ A LA LR +G + +A LL+G + +G+
Sbjct: 284 RTNDMTAADKDLTAALALAKTLRPAIFLAGVVKYNIGEYEQASRLLAGLTETEGKSNKTA 343
Query: 935 GVVFALACLP-DASDEALKVLQALQADTNLQTKDRTRLNALRA 976
V A A L DE+ ++L+ L A +T D + A+ A
Sbjct: 344 DAVRAAALLKLGRDDESYRLLRPLAAGDG-ETADLYAMAAVAA 385
Score = 34.7 bits (78), Expect = 3e-05
Identities = 78/414 (18%), Positives = 132/414 (31%), Gaps = 17/414 (4%)
Query: 537 GDLAAARAQYENTLQSHPQNVVACNGLANVLKELGDLPAARSQYENTLQRHPQDVFARSG 596
G AAR + L P + A G A + G AAR+ P DV
Sbjct: 150 GQDGAARLALDKALDIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVA 209
Query: 597 LAEVLKELGDLPAARTQYENTLKSHPRDVVASCGLAEVLKELGDLPAAHVQYENTLQSHP 656
A+ D AA + P + + LA+ E G A L P
Sbjct: 210 QADTALSANDPAAAEGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIP 269
Query: 657 QNVFARNGLAEVLKELGDLPAARAQYESTLQSHPQNVVASCGLAEVLK-ELGDLPAARAQ 715
+ +A D+ AA + L + + + + LA V+K +G+ A
Sbjct: 270 AHPWALYLRGLTAYRTNDMTAADKDLTAAL-ALAKTLRPAIFLAGVVKYNIGEYEQASRL 328
Query: 716 YENTLKSHPQNVVTRNGL-AEILKELGDLPAAQELYE-------NTLQSHPKNVFARNGL 767
++ ++ T + + A L +LG + L T + A G
Sbjct: 329 LAGLTETEGKSNKTADAVRAAALLKLGRDDESYRLLRPLAAGDGETADLYAMAAVAAQGA 388
Query: 768 AELLKEQGDLPAARAQYENTLQSHPQNVVTSCGLAEVLKELGDLPAARAQYENTVQSHPQ 827
A + +G Y+ + P + L V GD A +
Sbjct: 389 AAMADSEG-------YYQKAVVLRPDDPALLTNLGIVKLARGDTTAGEDTLNRAAELEGD 441
Query: 828 NVVARNGLANVLKELGDLPAARAQYENTLQSHSQNVVARNGLANVLKELGDLPAARTQYE 887
+ A L + L + D A A +T + + + GD AR +E
Sbjct: 442 DKKALLLLFSSLLQKKDFDKAEALAGDTKRKYPDRAWGWTMDGMIQASRGDTAMARAAFE 501
Query: 888 NTLQSHPQDVVARNGLANVLRRMGAHAEAKALLSGWAQAKGRQRLLDGVVFALA 941
++ P A LA + G A+ ++ G+ + + + A+A
Sbjct: 502 TAVRKEPTAGDAVRNLALTALQSGDTEGARGVVEGYLRTNAGDSAMAMIAAAVA 555
Score = 31.6 bits (70), Expect = 3e-04
Identities = 53/226 (23%), Positives = 77/226 (34%), Gaps = 9/226 (3%)
Query: 503 GDLPAARALYEDTLQSHPQDTVARNGLAEVLKELGDLAAARAQYENTLQSHPQNVVACNG 562
GD AA + L++ P + A+ + E+ GD+ + +
Sbjct: 49 GDQKAALIHVSNALKAAPDNRDAKILMGEITLSGGDVWSGEKLLKEVRDGGAPAETWLRP 108
Query: 563 LAN--VLKELGD--LPAARSQYENTLQRHPQDVFARSGLAEVLKELGDLPAARTQYENTL 618
LA +L++ D L ARS E L + + GLA K G AAR + L
Sbjct: 109 LAKSLILQQKFDEALTLARSIPETELVGAVKTI---EGLALFGK--GQDGAARLALDKAL 163
Query: 619 KSHPRDVVASCGLAEVLKELGDLPAAHVQYENTLQSHPQNVFARNGLAEVLKELGDLPAA 678
P D A G A++ G AA + P +V A+ D AA
Sbjct: 164 DIDPADKDALIGAAQIETMAGHQDAARALLARAAAAAPDDVDVLVAQADTALSANDPAAA 223
Query: 679 RAQYESTLQSHPQNVVASCGLAEVLKELGDLPAARAQYENTLKSHP 724
+ P N + LA+ E G AR L P
Sbjct: 224 EGLFSQAAARLPLNPLIRLSLAQAQIEAGKNAEARQTLNTVLADIP 269