Pairwise Alignments

Query, 90 a.a., Type III secretion inner membrane protein (YscS,homologous to flagellar export components) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 89 a.a., flagellar biosynthetic protein FliQ from Sphingomonas koreensis DSMZ 15582

 Score = 47.8 bits (112), Expect = 3e-11
 Identities = 25/84 (29%), Positives = 49/84 (58%)

Query: 7  FVSLAVKGLYLSLVLSMPMVAAAAIVGTLMAVIQALTQIQEQTLGYAVKLIATAVALTLT 66
          F+++A + +++  + S P++  A + G ++ ++QA T IQEQTL +  KL    V+L + 
Sbjct: 6  FLTVAREAMWVLALASAPILIPALLSGLILGMVQAATSIQEQTLTFVPKLAIVGVSLVIF 65

Query: 67 LNWIGSEILQYTRQLFDLIPFIGR 90
             I + +  +T  +F+ IP + R
Sbjct: 66 GGMIMTLLGDFTTGIFERIPELVR 89