Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E3

 Score = 1113 bits (2879), Expect = 0.0
 Identities = 595/1148 (51%), Positives = 774/1148 (67%), Gaps = 23/1148 (2%)

Query: 9    GKRHTVPHPGGSADALMLAQLGAREKAEGRLTAIVTADANDAQRLIDEMAFFAPGLRCAL 68
            GK+H    PG    AL LA   A   A+ R T ++TAD+  A+RL  E++FFAP L    
Sbjct: 14   GKQHWGNLPGA---ALSLAIAEAASAAK-RFTLLLTADSQSAERLEQELSFFAPDLPVLH 69

Query: 69   FPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRLAPPSFLAG 128
            FPDWETLPYD FSPHQD+IS+R+A+L+R+ +        V+++P TTAL+RLAP  FL G
Sbjct: 70   FPDWETLPYDLFSPHQDIISQRIASLYRLPELSHG----VLVVPITTALHRLAPTKFLLG 125

Query: 129  YTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSLVPYRVDLF 188
             +    + QKLD  +++ +L  +GY+ V  V   GE+AVRG LIDLFPMGS +PYR+DLF
Sbjct: 126  SSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLF 185

Query: 189  DDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEGDPTKSRIY 248
            DDEI+++RTFDP++QRS+  V  VRLLP +EFP+   A  +F++R+RE  + D  +  I+
Sbjct: 186  DDEIETLRTFDPENQRSIDKVESVRLLPAKEFPLQKEAVTRFKARFRERFDVDFRRCPIF 245

Query: 249  KDIGNGVATAGIEYYLPLFFDDTATVFDYLGTDATVVLHGDLEPAFQRFWQDTKDRHRLL 308
            +D+ +G+  AGIEYYLPLFFD+T+T+FDYL  D  V     +E A + FW D ++R+   
Sbjct: 246  QDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEER 305

Query: 309  RGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHVQK-----LGDLSVV 363
            R D  RP+LPP  LFL  E  + R     + V   +QQD+E G   ++     L +L++ 
Sbjct: 306  RVDPSRPLLPPAELFLPVEDCFARLKNWPRVVA--SQQDVETGVGRERFPATPLPNLAIE 363

Query: 364  RGAEDPLARLQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLAEFQASDEK 423
              A  PL  L   +   + RVL  AES GRRE LL+ L    + P   DS  +F AS E+
Sbjct: 364  AKANQPLQALSNFLDGFSGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVASKER 423

Query: 424  TGIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIKDLSELNVGD 483
              I  A L  G    +  +  + E+ LF      RRRR++   ++ DA+IK+L+EL  G 
Sbjct: 424  LAITIAPLDEGLVLDNPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELREGA 483

Query: 484  PVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLQLIGRYTG 543
            PVVH  HG+GRY GL  +++  +         EFL LEYA+ A LYVPV+ L LI RYTG
Sbjct: 484  PVVHIDHGVGRYLGLATLEIENQ-------AAEFLTLEYAEGAKLYVPVANLHLIARYTG 536

Query: 544  VSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRYSAQDYEVFA 603
                 APLH+LGS  W KAKRKAAEQVRD AAELL+IYARRAAR+G+AF     DY  F+
Sbjct: 537  SDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFS 596

Query: 604  NDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGRQVAF 663
              F FEET DQ+  I AV +DM++PRPMDRLVCGDVGFGKTEVA+RAAF+AV GGRQVA 
Sbjct: 597  AGFPFEETPDQQTTIDAVREDMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAI 656

Query: 664  LAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVDIVVGTHKLL 723
            L PTTLLA+QH+ +  DRF+ WPV V  MSRF+S KE+ AA   LA+G +DIV+GTHKLL
Sbjct: 657  LVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLL 716

Query: 724  SESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLS 783
             + VK K+LGL+IIDEEHRFGVR KE +KALR+EVD+LTLTATPIPRTL MA+ G+RDLS
Sbjct: 717  QDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLS 776

Query: 784  VIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP 843
            +IAT P RRL+++TFV  +    ++EA+LREL RGGQVY+LHN+V+TIE     L E++P
Sbjct: 777  IIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVP 836

Query: 844  EARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMSRADKFGLA 903
            EARI I HGQM ERELE+VM DF  +RFNVL+ STIIETGIDVP+ANTI++ RADKFGLA
Sbjct: 837  EARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLA 896

Query: 904  QLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYLAMHDLEIRG 963
            QLHQLRGRVGRSHHQAYAYL+ P  + +T  A +RL+AI   ++LG+GF LA +DLEIRG
Sbjct: 897  QLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRG 956

Query: 964  AGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVTTDINLHAPALLPN 1023
            AGE+LG+ QSG +  VGF LY EML  AV S++ G +P+L  PL    +INL  PAL+P 
Sbjct: 957  AGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRLPALIPE 1016

Query: 1024 DYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVHRLRCISTPYG 1083
            DY  DVH RL  YK++A+A   D +  L  E++DRFG LP   + L+ +  L+  +   G
Sbjct: 1017 DYLPDVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRMTLLKLQAEQLG 1076

Query: 1084 VVKVDAAPGVTNITFRANPPFEPMRIIELIQ-KNRHIKLAGNDKLRIERPLPEVKDRVQL 1142
            + KVD  P    I F A  P +P+ +I+LIQ + +  K  G    +   P+   ++R   
Sbjct: 1077 IKKVDGGPQGGRIEFGAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNT 1136

Query: 1143 VRDVLRSL 1150
            V  +   L
Sbjct: 1137 VEALFEHL 1144