Pairwise Alignments

Query, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  167 bits (422), Expect = 6e-46
 Identities = 103/311 (33%), Positives = 168/311 (54%), Gaps = 10/311 (3%)

Query: 64  LQDDAQAVGTLRSRQSVTLKPETSGRVARIVFADGARVKAGQLLVQLDDTLQRAELSQAQ 123
           L      +G L + ++V + P+ +G++ +I       VK GQLL++LDD   +A +++A 
Sbjct: 51  LAQSVSLIGKLAADRAVVIAPQVTGKIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEAN 110

Query: 124 AQLSIARANLKRNQELVAQNFVAQRVVEESQANLQVAEAQVALADARLQRMRITAPFAGT 183
           A L+     LK  ++L+++N + Q  ++  +A++ +A A++A A A L    + APFAG 
Sbjct: 111 AFLNDETRKLKEFEKLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQ 170

Query: 184 VGLRSINLGAYVKDGDSLVNLEDTSMLTVDFRLPERYQSQLAPGQVVQVQLDALPNRPFE 243
            GL + + G  V  G+ L+ L+D S + +D ++PE + SQ++ G  V     A P   F 
Sbjct: 171 TGLINFSEGKMVSTGNELMTLDDLSSMRLDLQVPEHFLSQISIGMPVSSTSRAWPGETFI 230

Query: 244 AKVLAVDPLLDANGRSISVRAVMPPAADNVLRPGMFARVLIVFSVNERALVVPEEALVPQ 303
            KV+A+DP ++    ++ +R V     DN L+PGM     I F     A +VP +AL   
Sbjct: 231 GKVVAIDPRVNEETLNLKIR-VQFENTDNRLKPGMMMSSTITFPPIS-APIVPVQALEYS 288

Query: 304 AGKQYAYVLDEQGEGDAKKRLSRRVEVALGARRGSEVEVVSGLQQGDAVVIAGQQRLQRD 363
             K+Y YV+ E         ++ R EV LGAR G +V + SGL+ GD VV+ G   + RD
Sbjct: 289 GTKRYVYVVGED-------HIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNM-RD 340

Query: 364 GTAVRVVNMAA 374
           G  +  V + A
Sbjct: 341 GLKINEVALEA 351