Pairwise Alignments

Query, 666 a.a., Type IV secretion system protein VirD4 from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 554 a.a., conjugal transfer protein TraG from Bifidobacterium breve UCC2003

 Score = 69.7 bits (169), Expect = 3e-16
 Identities = 113/500 (22%), Positives = 192/500 (38%), Gaps = 59/500 (11%)

Query: 88  LVAIGMSIWRSRQSRLVTT-----YGSARWANADDIRKAGLTQPAGVF-------LGQHD 135
           LVA+    W  R++  +T      +GSA WA   DI+      PA          L    
Sbjct: 68  LVAVAGLAWAYRRAARLTLRNGEEHGSAHWAGPRDIKLFIDPDPAHNLRFTRTERLSTDT 127

Query: 136 RQYLRHEGPEHVLTFAPTRSGKGVGLVVPTLLSWPASAVIHDIKGENWQITAG---WRSR 192
           R+ LR+    +VL    + SGK    V P LL    +  + D KGE  + T      R  
Sbjct: 128 RRTLRNL---NVLLLGSSGSGKTRYYVKPNLLGADMNWAVTDPKGELKRDTESPMKARGY 184

Query: 193 FSHCL-LFNPTDAKSAAYNPLLEVRRGAHEVRDVQNIADILVDPEGALEKRN---HWEKT 248
             H L L + T  +S  +NP+  +     ++  ++   +++ +  G  +++N    WE  
Sbjct: 185 AVHALDLVDLT--RSDRFNPMRYIDPAEPQLAILRLTDNLVTNATG--DRKNGDGFWEDA 240

Query: 249 SHALLVGAILHVLYAGEDKTLRGVANFLSDPASPFELTLHRMMTTPHLGDGPHPVVASAA 308
             ALL   I  V Y  ++ TL  V + L    +  +      +      +    + A  A
Sbjct: 241 EKALLSALIAWVHYTEDEPTLNHVTDMLDQMGASEQDEEREFIVDALFAETRVEIAAMRA 300

Query: 309 RE-----------------------VLNKSDNERSGVLSTAMSFLGLYRDPTVAEVTSRC 345
            E                        L  +   +  ++ T    L   +   V  + S  
Sbjct: 301 HEDDYDEQTRDMLEGLAFACAQYSMFLKGAGETKKSIIITTGVHLAPLQVREVRRILSGD 360

Query: 346 DWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQ-IGRRLTESLDGSDGIARRHKL 404
           D  +  L   +  V  YL +P  D + T   +  +  Q +   L    D +DG      +
Sbjct: 361 DIHLESLDEGKRVV--YLELP--DTNATFGFLASVFYQCLFETLVRKADHTDGGQLGRDV 416

Query: 405 LLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQN-HSILDNCHVRVT 463
             +LDEF  +G++  F   +A +   GI   +I Q+++Q    Y  +  +I  NC   + 
Sbjct: 417 HCLLDEFANIGKIPNFVRLIATIRSRGISCSIILQTVSQGKSLYRDDWETIAGNCDSWLF 476

Query: 464 FATNDERTAKRISETLGTATELRAQRNYAGHRLAPWLDHLMVSRQETARPLLTPGEVMQL 523
              N+  T K IS+ LG  T    + +        W      S ++ AR LLTP E+ +L
Sbjct: 477 LGGNEASTTKTISDRLGDQTIDVIETSETKGANGSW----SRSVRKNARKLLTPDELGRL 532

Query: 524 PPDEAVVMVSSVAPIKAKKL 543
              + + ++  + P  + KL
Sbjct: 533 DTSQCIYLLRGIPPFLSHKL 552