Pairwise Alignments

Query, 531 a.a., Sensory box histidine kinase from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 994 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  176 bits (445), Expect = 5e-48
 Identities = 114/353 (32%), Positives = 172/353 (48%), Gaps = 7/353 (1%)

Query: 181 GFSREQVGHLHLADLTAPRVGEEEEIGIHDTIRLAIDRGQWETRGWLKRAGGEAFWGQTL 240
           G+ RE++      ++T P     +   +H  +   ID    E R   +   G   W    
Sbjct: 646 GYPREELLGRTFQEITHPDDLYSDLEQMHRLLAGEIDSYAMEKR--YRHRDGHLVWINLT 703

Query: 241 ITALRGENDELEGLSCITRDMTAAKDLDRVMNDLNAELDRRVTQRVRQYTVPNKDLDIFT 300
           ++ +R  +   E       D+   K+ +  ++ LNA+L+RRV +R  +    N++LD F 
Sbjct: 704 VSLVRAADGSPEYFIAAVEDIQRRKEAEGEIHRLNADLERRVEERTAELRAANRELDSFA 763

Query: 301 HHITHDLRGPMRHINTFAGLIAEALGEDASDEIRHFRDAMKRASQRLNAMIENLLTYSRI 360
           H ++HDLR P+R I  F+  I E  G     E R F D +  + Q++ A+IE LLT SR 
Sbjct: 764 HAVSHDLRAPLRAITGFSRAIIEDHGTALPAEAREFLDHIIASGQQMGALIEGLLTLSRS 823

Query: 361 GRIDLHPGQLEMKSVLEGVVSRLRQSEPHRDIQWVIQDDLPAVVADAAMVADLFTRLLDN 420
            R +L    +++ ++   ++  L +SEP   + W ++D L A   D  M+  +   LL N
Sbjct: 824 SREELRRDDIDLSALARRILEELARSEPGHRVAWQVEDGLVA-RGDIRMIGVVLRNLLGN 882

Query: 421 AMKFTRPCEQAEIQIGCRAESDGSCLFFIVDNGVGFDVAKAHNLFLMFQRQHHSLDFEGY 480
           A K+T       I++  R + +    F I DNG GFD+A+   LF  FQR H   +F G 
Sbjct: 883 AWKYTARTAAPLIRVHARRQ-EKQIQFCIADNGAGFDMAQVGKLFQPFQRLHRQDEFPGI 941

Query: 481 GAGLALCQRIVQRHNGRIWLDSTPGHGCAVYFTLPV---ETAAATTSRLAALG 530
           G GLA  QR+V RH G I      GHG +  FTLP+   E A    S  AA G
Sbjct: 942 GIGLATVQRVVHRHGGSIEARGEAGHGASFCFTLPLPENEPAPPAPSTPAAPG 994



 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 31/305 (10%)

Query: 238 QTLIT-ALRGENDELEGLSCITRDMTAAKDLDRVMNDLNAELDRRVTQRVRQYTVPNKDL 296
           Q+ IT +LR + +++E      R  T A++  R ++  NAEL  R+ ++ R+        
Sbjct: 162 QSRITDSLRQQAEKMEA-DIYARSKTIAENNLR-LHQANAEL-ARLYEKTRELDELKTQ- 217

Query: 297 DIFTHHITHDLRGPMRHINTFAGLIAEALGE-DASDEIRHFRDAMKRASQRLNAMIENLL 355
             F  +I+H+LR P+  I    G + + L + D +  +R   + ++R ++ L   + +LL
Sbjct: 218 --FFANISHELRTPLTLI---LGPVGKHLADPDLAPALRRDLEVVERNARMLYRHVNDLL 272

Query: 356 TYSRI--GRIDLHPGQLEMKSVLEGVVSRLRQSEPHRDIQWVIQD--DLPAVVADAAMVA 411
             +++  GR+ +H  + ++  +   + S        R +++V+    DL A V DA    
Sbjct: 273 DVAKLEAGRMVMHYTEGDLAHLTRVIASHFDSLAEGRRVRYVVTTPPDLTAQV-DAEKYQ 331

Query: 412 DLFTRLLDNAMKFTRPCEQAEIQIGCRAESDGSCLFFIVDNGVGFDVAKAHNLFLMFQR- 470
            +   LL NA KF    +   IQ+   A + G     + DNG G   A    +F  F++ 
Sbjct: 332 RILLNLLSNAFKFAG--DGGAIQLRLTA-AGGQARIEVEDNGPGIPEAMREQVFEPFRQV 388

Query: 471 -----QHHSLDFEGYGAGLALCQRIVQRHNGRIWLDSTPGHGCAVYFTLPVETAAATTSR 525
                +HH     G G GLA+ + + Q H G + +D+ P  G    FTL +   A   ++
Sbjct: 389 EGGSSRHHG----GTGLGLAIVRELAQLHGGSVRIDAAPSSG--ALFTLELPLLAPPGTQ 442

Query: 526 LAALG 530
           L A G
Sbjct: 443 LQAQG 447



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 50/169 (29%), Positives = 63/169 (37%), Gaps = 16/169 (9%)

Query: 25  MAYFDLDLRCHFGNQAFCDSQGLRPSELEGRPFQDCFAQDALPALLPRFMQAVGGEKQVL 84
           MA+   D R    NQ  CD  G    EL GR FQ+    D L + L +  + + GE    
Sbjct: 625 MAHVAPDGRWLLVNQRLCDIIGYPREELLGRTFQEITHPDDLYSDLEQMHRLLAGEIDSY 684

Query: 85  VSE---QHIPGSHAVRLE-TAFVPDFRDGVVHGVFLEARDITE--------HRHDPALEE 132
             E   +H  G H V +  T  +    DG          DI          HR +  LE 
Sbjct: 685 AMEKRYRHRDG-HLVWINLTVSLVRAADGSPEYFIAAVEDIQRRKEAEGEIHRLNADLER 743

Query: 133 HVNRRTHELRQAKRRFDLMVDALQDSCIYFLDPTGLITEWSESAHRLHG 181
            V  RT ELR A R  D    A+         P   IT +S +    HG
Sbjct: 744 RVEERTAELRAANRELDSFAHAVSHD---LRAPLRAITGFSRAIIEDHG 789