Pairwise Alignments

Query, 1053 a.a., Probable transmembrane drug efflux protein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1026 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

 Score = 1008 bits (2605), Expect = 0.0
 Identities = 539/1039 (51%), Positives = 710/1039 (68%), Gaps = 28/1039 (2%)

Query: 19   RFNLSQWALDHQAFTRYLMIVLMVLGVVGYFQLGQDEDPPFTFRAMVVRAYWPGATAEQV 78
            RFNLS WAL ++    YLM++L ++G + Y +LGQ EDPPFTF+AMV++  WPGATAE++
Sbjct: 2    RFNLSAWALQNRQIVVYLMLLLAIVGALSYSKLGQSEDPPFTFKAMVIQTQWPGATAEEM 61

Query: 79   AEQVADRIEKTLQEVPYADKIRSYSKPGETLIIFQLKDSSPPQEVQQIWYTARKKVGDMR 138
            + QV +RIEK L E    ++I S+S+PGE+ + F  +DS   +++  +WY  RKK+GD++
Sbjct: 62   SRQVTERIEKKLMETGEYERIVSFSRPGESNVTFMARDSMRSKDIPDLWYQIRKKIGDIQ 121

Query: 139  GTLPQGVVGPFFNDEFGDVYGVIYALQGEGFSPADKKQVADDVRQRLLRVKDVRKVELFG 198
             T P GV GPFFNDEFG  +G IYAL G GF  A  K  AD ++ +L RVK V KVEL G
Sbjct: 122  HTFPPGVRGPFFNDEFGTTFGNIYALTGSGFDYAILKDYADRIQLQLQRVKSVGKVELIG 181

Query: 199  VQDEKLYIEISQKRLATLGLNLQQVLDALGQQNAVESAGSVQTPQDVVQVRVAGAFNSVE 258
            +QDEK++IE+S  +LATLG+ L+ V  AL  QNAV +AG V+T  D VQ+RV G+F +V+
Sbjct: 182  LQDEKIWIELSNVKLATLGVPLEAVRQALEAQNAVTAAGFVETISDRVQLRVTGSFETVK 241

Query: 259  QLRAMPIRAANGTQIRLGDIAKIGLGYVDPPQVLVRHEGKDSIALGISMAKGGDIIALGK 318
            Q+R  PIR A G   R+GD+A++  G+ DPP   +R  G+ ++ L +SM  GGDI+ LG+
Sbjct: 242  QIRDFPIRVA-GRTFRIGDVAEVHRGFNDPPAPRMRFMGEPALGLAVSMKSGGDILVLGQ 300

Query: 319  ALKTTVAGIEATLPAGMTLAQVQDQPSAVTNSVNEFVKVLIEAVVIVLAVSFLALGLHRR 378
            AL+   A ++  LPAGM L +V DQP+AV   V EFVKVLIEA+VIVL VSF +LG    
Sbjct: 301  ALEQEFARLQQELPAGMQLRKVSDQPAAVKTGVGEFVKVLIEALVIVLLVSFFSLG---- 356

Query: 379  PGGRGLKRYVLDMRPGLVVFITIPLVLAITFLAMHYWGIGLHKISLGSLIIALGLLVDDA 438
                        +R GLVV ++IPLVLA+TF AM Y  IGLHKISLG+L++ALGL+VDDA
Sbjct: 357  ------------VRTGLVVALSIPLVLAMTFAAMSYLDIGLHKISLGALVLALGLMVDDA 404

Query: 439  IIAVEMMVRKLEEGYDMMRAATFTWDATAMPMLTGTLITAAGFLPIGLANSTTGEYTFAI 498
            IIAVEMM  K+E+GYD ++AA+F W +TA PMLTGTLITAAGFLPI  ANS+TGEYT +I
Sbjct: 405  IIAVEMMAIKMEQGYDRLKAASFAWTSTAFPMLTGTLITAAGFLPIATANSSTGEYTRSI 464

Query: 499  FAVTVLALVISWVVAVLFVPYLGVVLL----KVKPHAEG---EPHEVFDGPFYVRFRAVV 551
            F V  ++L+ SW+ AV+FVP +G  LL    K   H  G   E H+ +  PFY R R +V
Sbjct: 465  FQVVAISLIASWIAAVMFVPLIGEKLLPDLAKKTAHKHGTSSEGHDPYATPFYQRVRRLV 524

Query: 552  DWCVQHRWLTIGATILTFVLGIAGMGSVQQQFFPDSSRPEILVDIWLPEGSSMPAMDEVT 611
             +CV+ R   I  T+  F   +     V QQFFP S R E++VD+ L EG+S+ A +   
Sbjct: 525  TFCVRRRKTVILLTLAIFAAAVVLFRLVPQQFFPASGRLELMVDLKLAEGASLKATEAEV 584

Query: 612  RRVENRLAKEEGVRGVTTWVGSGVPRFYLPLDQIFPQTNVSQMIVLPQDLKTREHLRKAL 671
            RR+E  L +  G+     +VG+G PRFYLPLDQ  P T+ +Q +VL   +++RE LR  L
Sbjct: 585  RRLEELLKERAGIDNYVAYVGTGSPRFYLPLDQQLPATSFAQFVVLADSIESREALRSWL 644

Query: 672  PGLLATEFPEVRGRVKLLPNGPPVPYPVQFRVVGSDPQVLRGLADEVKLAMRENPNMRGV 731
               +  +FP +RGRV  L NGPPV YPVQFRV G    V+RGLA +V   + ENP++  V
Sbjct: 645  IERMREDFPSLRGRVTRLENGPPVGYPVQFRVTGEHIDVVRGLARQVAAKVNENPHVANV 704

Query: 732  NDNWNESVKRLRLEVDQAKARALGVSSQSIAQASRTLLSGTTVGQYREGDKLIDIVLRQP 791
            + +W E  K +RL VDQ +ARALGV++  ++   R   +G++V Q+RE ++LI+I+LR  
Sbjct: 705  HLDWQEPSKMVRLNVDQDRARALGVTTAELSGFLRRTFTGSSVSQFREDNELIEILLRGT 764

Query: 792  LEERDAITSLANAYLPTASGQAIPLLQIARPVFDWEPGVLWRENRDYAITVQGDVVEGLQ 851
              ER  ++ L +  +PT SG+++PL Q+A   + +E GV+W  NR   +TV+ DV    Q
Sbjct: 765  ERERLELSMLPSLAIPTESGRSVPLSQVATLEYGFEEGVIWHRNRLPTVTVRADVYGEQQ 824

Query: 852  GATVTAQLQPKLKAISDGWASKGLGAYHIEVAGAVEESSKGSASIVVGVPLMLFIVFTLL 911
             A +  +++P L  I D       G Y +EV G VE+S +G  S+  G+PL + +V TLL
Sbjct: 825  PAALVREIEPTLAEIRDQLP----GGYLLEVGGTVEDSERGQRSVNAGMPLFVIVVLTLL 880

Query: 912  MLQLQSFSRSMLVFLTGPLGMAGVAGALLLLNRPFGFVALLGVIALMGMIQRNSVILIDQ 971
            M QL+SFSRS +VFLT PLG+ GVA  LLL  +PFGFVA+LG IAL GMI RNSVIL+DQ
Sbjct: 881  MAQLKSFSRSAMVFLTAPLGIIGVALFLLLFGQPFGFVAMLGTIALSGMIMRNSVILVDQ 940

Query: 972  IEQDRARGVPAWDAIVEAAVRRMRPIVLTAAAAVLAMIPLSRSVFWGPMAVAIMGGLIVA 1031
            IEQD   G   + AIVEA VRR RPIVLTA A+VLAMIPLSRS+F+GPMAVAIMGGLIVA
Sbjct: 941  IEQDIGAGQARFSAIVEATVRRFRPIVLTALASVLAMIPLSRSIFFGPMAVAIMGGLIVA 1000

Query: 1032 TVLTLLALPAMYAAWFRVR 1050
            T LTLL LPA+YAAWFRVR
Sbjct: 1001 TALTLLFLPALYAAWFRVR 1019