Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 450 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pseudomonas stutzeri RCH2

 Score =  275 bits (703), Expect = 2e-78
 Identities = 174/455 (38%), Positives = 244/455 (53%), Gaps = 43/455 (9%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           L +E L  D +GIA   +G+  F+EGALP E+V   V   ++         + + S+QR 
Sbjct: 29  LNIERLANDGRGIAF-VEGRTWFVEGALPGEEVEARVLSARSQVVEARCERVLQASAQRQ 87

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152
              CPH    A  CGGC +QH   A Q+A+KQ  L + L  +  ++ E    P+ GPA+G
Sbjct: 88  VEPCPH----ARLCGGCNLQHAPIADQLALKQHTLAEQLARVADLQPEAWAEPLVGPAFG 143

Query: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDAR 212
           YR RARL+VR   K   + IGF    S+ +  ++ CPVL   +  +L  L   +  +   
Sbjct: 144 YRRRARLAVRWDVKSKHLDIGFRASSSQEIVSIRECPVLVQPLQTLLPGLLTALRDLSKP 203

Query: 213 ETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVKLLDEG 272
           +    +EL SG    A+++RH   L E DLARLR+F   H  Q W Q +G       D+ 
Sbjct: 204 QAIGHVELFSGT-AEAVLIRHTAALPESDLARLRSFATAHRAQLWWQGEGEPQP---DDC 259

Query: 273 GEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNFT 332
              L Y L  + + + ++P DF QVN  +N  +V +AL  LDA  DE V+D FCGLGNF+
Sbjct: 260 AASLGYRLDAWDLELAWRPGDFVQVNAPVNDAMVAQALEWLDAGKDEAVLDLFCGLGNFS 319

Query: 333 LPIATTAGEVLGIEGSEALVARSRENLAGN--------QAGRDRPLAPTTFAARNLFEMT 384
           LP+A +   V+G+EG EA+VAR++EN   N        +A   +PLA   +A      + 
Sbjct: 320 LPLARSGARVVGVEGVEAMVARAQENAQRNALEHAHFYRADLSKPLADAPWAGSGFAAV- 378

Query: 385 PELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLAR 444
                        L+DPPR+GA  + + ++ L             QR+VYVSCNPATLAR
Sbjct: 379 -------------LLDPPRDGALEIVRQMSML-----------KAQRVVYVSCNPATLAR 414

Query: 445 DAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFE 479
           DA  L  Q GYR   AGV++MF  TAHVE+MA+FE
Sbjct: 415 DARELASQ-GYRLKRAGVLDMFPQTAHVEAMALFE 448