Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 415 a.a., RNA methyltransferase from Sinorhizobium meliloti 1021

 Score =  144 bits (363), Expect = 6e-39
 Identities = 146/458 (31%), Positives = 206/458 (44%), Gaps = 56/458 (12%)

Query: 31  GWLAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQ 90
           G + ++ L     G+AR   G V F    LP E VS+ V++       GT+ ++   S +
Sbjct: 4   GTVTIDRLGAQGDGVARTEAGPV-FAPFTLPGETVSLAVNKAN-----GTLISLKEASPE 57

Query: 91  RVRPGCPHFGLHA--GACGGCKMQHLHEAAQVAVKQRVLEDNLWHLG---KVRAETLMRP 145
           RV P C HFG     G CGGC +QH  +A   A K+ ++ D L   G   +V A  + RP
Sbjct: 58  RVEPPCRHFGPDGVNGTCGGCTLQHASDALYHAFKRNLVIDALRSKGLTPEVGALIIARP 117

Query: 146 IEGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLREL 205
                 G R RA  + R   K  E+L+G+++ +S ++  +  CP+  P + + L  +R++
Sbjct: 118 ------GDRRRAAFTARRTEK--ELLLGYNQMQSHHIVSIGECPITSPGIVSRLATIRKI 169

Query: 206 IFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDT 265
              M +     +I +   D  T L L   E L   D  R      R  V   L  +G   
Sbjct: 170 AAAMASSAEPFRITVLETD--TGLDLA-FEGLKLSDPQR------RSAVDAVLGERGIAR 220

Query: 266 VKLLDE-GGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDW 324
           V L  E   E L  A+   G+T+   P  FTQ        +    L L      +RV D 
Sbjct: 221 VSLNGEIVVEPLKPAIDFDGVTVSPPPGAFTQATRPAEDAMA--KLVLAHVGKAKRVADL 278

Query: 325 FCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLFE-- 382
           F G+G F L IA TA  V  +EG +  V ++ +  A N  G    L P T   R+LF   
Sbjct: 279 FAGIGTFALRIARTA-RVHAVEGDDRAV-KALDFAARNTQG----LKPVTAEKRDLFRRP 332

Query: 383 -MTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPAT 441
            M  EL   D V    + DPPR GA      +A        R G    ++I  VSCNP T
Sbjct: 333 MMAQELKAFDAV----VFDPPRAGAETQCHELA--------RSG---VKKIAAVSCNPVT 377

Query: 442 LARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFE 479
           LARD  +L   AGYR      ++ F  +AHVE++A  E
Sbjct: 378 LARDLSILT-AAGYRITGVTPIDQFLWSAHVETVATLE 414