Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 443 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  234 bits (597), Expect = 5e-66
 Identities = 158/466 (33%), Positives = 237/466 (50%), Gaps = 33/466 (7%)

Query: 18  EAAPESPDRVLPEGWLAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWE 77
           +A P    ++  +  L V+ LD    GIA    GKVVFI GALP E V V +  +K N+ 
Sbjct: 6   KAKPNQAKKLSQKIALKVQRLDHLGAGIAEH-QGKVVFIPGALPGETVEVQLTEQKKNYA 64

Query: 78  AGTVTAIHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKV 137
              +  +   S  R  P CP +G     CGGC +QHL    Q+  K++ L D +      
Sbjct: 65  RAKLQRVSEASPDRQTPPCPWYG----KCGGCDLQHLSLPRQLEYKRQALGDIVSRSAAQ 120

Query: 138 RAETLMRPIEGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSA 197
                   + G +W YR RARL+     +  ++ +GF E  S+ V  +  C VL   +S 
Sbjct: 121 TVTVNTDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSE 180

Query: 198 MLMPLRELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWW 257
           ++ P   L+  +  ++    +EL    +    VLR   PL++ D   L AF     +   
Sbjct: 181 LISPFATLLNRLKGKQRLGHLELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALL 240

Query: 258 LQAKGPDTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARA 317
           LQ    + ++ L  G E+  Y L   G+ + F P +F QVN  +N+ +V +A+  LD  A
Sbjct: 241 LQGNEGE-LEFLSSGHELPYYQLD--GLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHA 297

Query: 318 DERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAA 377
            ERV+D FCG+GNF+LP+A    EV+G+EG   +VA++++N A N  G D      +F  
Sbjct: 298 GERVLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAIN--GLDN----LSFYC 351

Query: 378 RNLFEMTPELLVAD---GVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVY 434
            +L     E L A+   G   K L+DP R GA+   K +  +            P +++Y
Sbjct: 352 ADL----SEDLAAEPWLGKIDKLLLDPARAGAYESLKWLKKM-----------KPAKVLY 396

Query: 435 VSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFEL 480
           VSCNPA+LARD+ +L+ +AGY+    G+V+MF  T H E MA+FEL
Sbjct: 397 VSCNPASLARDS-VLLFEAGYQLTRLGLVDMFPQTHHSEGMALFEL 441