Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score = 88.2 bits (217), Expect = 5e-22
 Identities = 110/421 (26%), Positives = 182/421 (43%), Gaps = 59/421 (14%)

Query: 96  CPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHL-GKVRAETLMRPIEGPAWGYR 154
           C +F  + G C  C++       Q+  K    E  L HL G +  +  + P+ GP +G+R
Sbjct: 3   CDYF--NRGLCQSCRLMSKPVTEQLLEK----EARLTHLLGGLPVDERLAPVSGPEFGFR 56

Query: 155 HRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELI-------F 207
           ++A++ V  +      ++G      + V D+  CP+ P  + A+L+ L   +       +
Sbjct: 57  NKAKMVV--MGAAHAPVLGIPGPDGQPV-DLSHCPLYPQDMQALLLELTSFVRRAGIPPY 113

Query: 208 GMDARETCPQIELAS-----GDDVTALVLRHLE--PLSEDDLARLRA-FGARHGVQWWLQ 259
            +D  +   +  L +     G+ +   VLR  +  P  E +L +L A F A   V   LQ
Sbjct: 114 RVDKAKGELKFILLTRSAVRGEFMLRFVLRSKDAIPRIERELPKLLADFPAIKVVSVNLQ 173

Query: 260 AKGPDTVKLLDEGGEVLSYALPEF--GITMPFKPTDFTQVNPFINRVLVVRALRLLDARA 317
                 ++  +E     +  L E   G+ +  +P  F Q NP +   L   A + +D  +
Sbjct: 174 PVHMARLEGEEEIFLTQATRLDEVFNGVPLFIRPKSFFQTNPEVASRLYATAAKWVDELS 233

Query: 318 DERVIDWFCGLGNFTLPIATTAGEVLGIE-GSEAL-VARSRENLAGNQAGRDRPLAPTTF 375
            + + D FCG+G F L  A  +  V GIE  +EA+  A++     G        L  T F
Sbjct: 234 PKSLWDLFCGVGGFGLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTDF 293

Query: 376 AARNLFEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYV 435
           A     +  PE+++         V+PPR G          + +    R     P+ I+Y 
Sbjct: 294 AMGQQAQEVPEVII---------VNPPRRG----------IGEELCERLSAFGPRAIIYS 334

Query: 436 SCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFELEPSKVPGADAAPAAA 495
           SCNP TLA+D  L+   +GYR     + +MF H+ H E + +   E        AA A+A
Sbjct: 335 SCNPETLAKDLALI---SGYRIARVQLFDMFPHSDHFEVLCLLLKE--------AACASA 383

Query: 496 D 496
           D
Sbjct: 384 D 384