Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Rahnella sp. WP5

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 113/403 (28%), Positives = 169/403 (41%), Gaps = 66/403 (16%)

Query: 103 AGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWGYRHRARLSVR 162
           AG C  C+        Q+A KQR L D L  L     +    P+ GP   +R++A++ V 
Sbjct: 8   AGTCRSCQWLDKPYLQQLADKQRDLSDLLSDLP---VDEWCEPVTGPESAFRNKAKMVVS 64

Query: 163 HVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDA--------RET 214
              ++   L+G   R    V D+  CP+ P    A+   L+  I             R  
Sbjct: 65  GSVERP--LLGMLHRDGTPV-DLCECPLYPASFPAVFSVLKIFIARAGLTPYNVARKRGE 121

Query: 215 CPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVKLLDEGGE 274
              + L        ++LR +   S+  LA+LRA         WLQ + P  +K++    +
Sbjct: 122 LKFLLLTESQKDGGMMLRFVLR-SDAKLAQLRA------ALPWLQQQLPQ-LKVISANIQ 173

Query: 275 VLSYALPEFGITMPF-----------------KPTDFTQVNPFINRVLVVRALRLLDARA 317
            +  A+ E    +P                  +P  F Q NP +   L   A   + AR 
Sbjct: 174 PVHMAILEGDTEIPLTDVQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWVRARG 233

Query: 318 DERVI-DWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLA--GNQAGRDRPLAPTT 374
           D R + D FCG+G F L  AT   ++ GIE S   +A ++E+    G Q    + L  T 
Sbjct: 234 DIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEFQALDSTG 293

Query: 375 FAARNLFEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVY 434
           FA        P+L+         LV+PPR G   + KA+ +   + A       P RI+Y
Sbjct: 294 FATGK--GEVPDLV---------LVNPPRRG---IGKALCEYLSHMA-------PDRILY 332

Query: 435 VSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAV 477
            SCN  T+A+D  LL     Y  +   + +MF HTAH E MA+
Sbjct: 333 SSCNAQTMAQDLALL---PDYHILRVRLFDMFPHTAHYEVMAL 372