Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Rahnella sp. WP5

 Score =  263 bits (672), Expect = 1e-74
 Identities = 173/469 (36%), Positives = 250/469 (53%), Gaps = 41/469 (8%)

Query: 26  RVLPEGWLAVESLDIDA--QGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTA 83
           RV     + V + D+D   QG+AR  +GK VF+ G LP EQ  V +   K+ +  G +  
Sbjct: 10  RVTTRQTITVTATDLDTFGQGVARH-NGKAVFVSGLLPGEQAEVTLTEDKSKYAKGKLKR 68

Query: 84  IHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLM 143
           +   S  RV+P CPH+      CGGC+ QH  EA Q   K   L   +     + A+ L 
Sbjct: 69  LLTTSDDRVKPLCPHYS----TCGGCQQQHASEALQQRSKSAALLRLISRETGILADPLP 124

Query: 144 RPIEGPAWGYRHRARLSVRHVHKK---------GEVLIGFHERKSRYVADMQVCPVLPPH 194
             I GP +GYR RARL ++    K         G +++GF +  S  +  +  CPVL P 
Sbjct: 125 -VIAGPQYGYRRRARLGLQIAGVKPGRKAGAVSGPLVMGFRQEGSNDLVAITKCPVLRPE 183

Query: 195 VSAMLMPLRELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGV 254
           +  +L+P++E +  + A +    +E+   D+   LVLRHL+PLSE D ARL AF A+H +
Sbjct: 184 LEQLLVPVQECLSSLSAAKRLGHLEMVLADNGPLLVLRHLDPLSEADRARLTAFAAQHQL 243

Query: 255 QWWLQAKGPDTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLD 314
             +L    PD+  L    GE   Y +   G+ + F P DF QVN  +N+ +V +AL  L+
Sbjct: 244 TIFL---APDSETLEPLCGEPPYYQID--GLNLKFGPRDFIQVNDAVNQQMVAQALDWLE 298

Query: 315 ARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTT 374
              ++RV+D FCG+GNFTLP+A  A +V+G+EG   LVA  ++N       R+  L   +
Sbjct: 299 LTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVATLVANGQDN------ARNNGLENVS 352

Query: 375 FAARNLFEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVY 434
           F   NL +   +   A     K L+DP R GA  +   I  L            P R+VY
Sbjct: 353 FFHENLEDDVSKQPWAAQGFNKILLDPARGGAAGVMTHIVKL-----------APARVVY 401

Query: 435 VSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFELEPS 483
           VSCNP TLARD+ +L+ +AGYR     +++MF HT H+ESMA+F + PS
Sbjct: 402 VSCNPTTLARDSKILL-EAGYRLAGVRMLDMFPHTGHLESMALF-INPS 448