Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 479 a.a., RNA methyltransferase, TrmA family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  134 bits (337), Expect = 7e-36
 Identities = 133/488 (27%), Positives = 203/488 (41%), Gaps = 71/488 (14%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           L V++L    + + R  +G+VVF+ G LP ++V   +   K  +   T+ A+   S  + 
Sbjct: 14  LTVDALAAGGRAVCRH-EGRVVFVAGGLPGQRVRARLTTVKRRFAEATLDAVLEPSPVQC 72

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAW- 151
            P C HFG     CGGC  Q L  A Q+  K+R + D L  +G +R   ++  +  PA  
Sbjct: 73  APFCAHFG----DCGGCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAER 128

Query: 152 GYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDA 211
           G+R++   +     + G++ +G   R SR V D+  C +  P    ++  +REL     A
Sbjct: 129 GFRNKMEFAFSQ-DRDGQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVREL-----A 182

Query: 212 RET-CPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARH---GVQWWLQA---KGPD 264
           RE+  P  + +  D     ++     L  D  A   A G      G Q  +Q    + P 
Sbjct: 183 RESGLPGWDDSRQDGFWRFLVVREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPG 242

Query: 265 TVKLLDEGGEVLSYALPEF----------------------------------GITMPFK 290
             + +    E L    PE                                   G  +   
Sbjct: 243 AAQAVSRLAEALRARFPEVTGVVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLLG 302

Query: 291 PTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEA 350
           P  F Q N     +L   A R+  A  D+ V D + G+G   L +A  AG V G E +  
Sbjct: 303 PDSFFQTNTAAAGLLYDEARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPE 362

Query: 351 LVARSRENLAGNQAGRDRPLAPTTFAARNLFEMTPELLVADGVAQKWLV-DPPREGAFAL 409
            V  +R N A N       +   +F + ++          +GV+ + +V DPPR G    
Sbjct: 363 AVNDARANAARNN------ILNCSFVSGDVRASLRRERPGEGVSPRIVVVDPPRAGLHED 416

Query: 410 AKAIADLHQNPALRGGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHT 469
                  HQ          P+RIVYVSCNPAT+ARDA L   + GY    A  V++F H+
Sbjct: 417 VVEAVSAHQ----------PERIVYVSCNPATMARDAALFTAR-GYALQEARPVDLFPHS 465

Query: 470 AHVESMAV 477
            HVE +A+
Sbjct: 466 PHVECVAL 473