Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 468 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  117 bits (293), Expect = 9e-31
 Identities = 113/454 (24%), Positives = 185/454 (40%), Gaps = 49/454 (10%)

Query: 48  RPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRVRPGCPHFGLHAGACG 107
           R +G+V+F++  LP +Q+ V +   +  +      A+   ++    P CPHFG     CG
Sbjct: 26  RHEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVTHTADECDPFCPHFG----DCG 81

Query: 108 GCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAW-GYRHRARLSVRHVHK 166
           GC  Q+L   AQ+A K+R + D+L  +G++ A  ++  +  P   G+R++   +      
Sbjct: 82  GCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFT-TDD 140

Query: 167 KGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELI--FGMDARETCPQI------ 218
           +  + +G   R    V D+  C +       ++   R++    G+   +           
Sbjct: 141 REMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFL 200

Query: 219 ---ELASGDDVTALVLRHLEPLSEDDLARLRAF------------GARHGVQWWLQAKGP 263
              E A G       +    P +E      RAF            G  H ++        
Sbjct: 201 VVREPARGGQCLVQCITAPHPEAEHVA---RAFFTALRQAVPEVTGCVHSIRSQNSQVAY 257

Query: 264 DTVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVID 323
               +  EG  VL+  L    I + F    F Q N     +L     R+      E V D
Sbjct: 258 GDATVFTEGEIVLTEKLG--AIELDFGHDTFLQTNTRATELLYGEVERMAGLSGREHVWD 315

Query: 324 WFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLFEM 383
            +CG+G+  L +A  A  + G+E + A V  ++ N    QA             R L   
Sbjct: 316 LYCGVGSIALWLAEHAATICGMEATPASVEAAQRNA---QAAGCTHCDFVAGDVRALLRS 372

Query: 384 TPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLA 443
             +    + +    + DPPR G          +H +       T P RIVYVSC+PAT+A
Sbjct: 373 RSKGKAQEPIPDVVVTDPPRAG----------MHPDVIDALLQTAPARIVYVSCDPATMA 422

Query: 444 RDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAV 477
           RD GLL+ +  Y    A  V++F HT HVE++ +
Sbjct: 423 RDVGLLMQR--YTLHEARPVDLFPHTPHVETVVL 454