Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 414 a.a., (Uracil-5)-methyltransferase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  118 bits (296), Expect = 3e-31
 Identities = 138/454 (30%), Positives = 188/454 (41%), Gaps = 63/454 (13%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           L +  L +   GIA  P    V+    LP E++     R +   +      I      RV
Sbjct: 9   LTITRLGLHGDGIAPGP----VYAARTLPGEEI-----RGEITGDRIAAPKIVTPCPNRV 59

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152
           +P CPH+      CGGC +QH  +      K +V+ D L   G       MRPI      
Sbjct: 60  KPPCPHYA----RCGGCALQHAADPFVADWKVQVVIDALSAHG---LSAPMRPIRTSPPR 112

Query: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFGMDAR 212
            R RA LS R + KKG  L+GFH R S  + D+  C VL P ++  L  L E +  + +R
Sbjct: 113 TRRRATLSGRRL-KKG-TLLGFHTRASDTIVDIPGCEVLAPAITEALPSLAEFLPLLGSR 170

Query: 213 ETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVKLLDEG 272
           +    + +   +    + +R  +PL       L A   R            D  +L  +G
Sbjct: 171 KGELALAVTVSEAGLDVDIRGGKPLDPALRLSLTALTQRL-----------DLARLSLDG 219

Query: 273 GEVLSYALP--EFG---ITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERVIDWFCG 327
              L+   P   FG   +T P  P  F Q        L+      +      R+ D F G
Sbjct: 220 KVFLTLRPPAQHFGPASVTPP--PGAFLQATAPGEAALLAAVTEAVGPA--RRIADLFAG 275

Query: 328 LGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRP-LAPTTFAARNLFE--MT 384
            G F LP+AT A EV  +EG   ++A      A +   R  P L+  T  AR+LF   + 
Sbjct: 276 CGTFALPLATRA-EVHAVEGDADMLA------ALDAGWRKTPGLSKVTTEARDLFRRPLL 328

Query: 385 PELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCNPATLAR 444
           P+ L   G     ++DPPR GA A   A+A              P RI  VSCNP T AR
Sbjct: 329 PDDLARFGAV---VIDPPRAGAEAQTAALASAQ-----------PDRIAAVSCNPVTFAR 374

Query: 445 DAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVF 478
           DA  L   AGY      VV+ F  + HVE  A F
Sbjct: 375 DAKTLC-DAGYALRWVQVVDQFRWSPHVELAAAF 407