Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 415 a.a., tRNA (uracil-5-)-methyltransferase related protein from Caulobacter crescentus NA1000

 Score =  129 bits (323), Expect = 3e-34
 Identities = 135/460 (29%), Positives = 196/460 (42%), Gaps = 64/460 (13%)

Query: 33  LAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWEAGTVTAIHRESSQRV 92
           L + ++     G+AR  DGK  F+   LP E V     R K +   G V  I   S +RV
Sbjct: 4   LTINAIGAQGDGLARTADGKPAFVPLTLPGEVV-----RAKMDGARGEVVEILAPSPERV 58

Query: 93  RPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKVRAETLMRPIEGPAWG 152
            P C H+G+    CGGC +QH       A K   +   L   G    ET + P       
Sbjct: 59  APACRHYGV----CGGCALQHWAAEPYRAWKAEQVRLQLSMEG---LETEILPTFAAPPA 111

Query: 153 YRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSAMLMPLRELIFG-MDA 211
            R R  L  R   K     +GF ER+S  +  ++ CPV  P + A L  L  L    ++ 
Sbjct: 112 SRRRVALHARKGGKGQGARLGFKERRSWNLVSIEECPVTDPRLVAALPALARLAEPFLEH 171

Query: 212 RETCPQIEL---ASGDDVTAL-VLRHLEPLSEDDLARLRAFGARHGVQWWLQAKGPDTVK 267
            ++ P + +   A+G D+    V R    LS D  AR+RA            A G     
Sbjct: 172 PKSAPTLHVTLTATGLDIDITGVERKSGGLSAD--ARMRA----------AMAAGEGDFA 219

Query: 268 LLDEGGEVLSYA------LPEFGITMPFKPTDFTQVNPFINRVLVVRALRLLDARADERV 321
            +   GE +  A      L +  + +P  P  F Q  P   + +V   L + +A+   RV
Sbjct: 220 RVTLAGETIYGARQPLVKLGQAVVALP--PGSFLQAVPAAEKAMV--ELAVAEAQGASRV 275

Query: 322 IDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGRDRPLAPTTFAARNLF 381
            D +CG+G FT P+A  A +V   E S   +   +  + G        L P T  AR+L 
Sbjct: 276 ADLYCGVGTFTFPLAEVA-QVYAAEMSAPAITALKAAIGGAPG-----LKPITAEARDLV 329

Query: 382 E---MTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGGWTPPQRIVYVSCN 438
               ++ EL   D V    ++DPPR GA      IA            +   +++ VSCN
Sbjct: 330 RRPVLSTELAKTDVV----VIDPPRAGAAEQTVEIAK-----------SKVAKVLGVSCN 374

Query: 439 PATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVF 478
           P T A+DA +LV  AG++ V    V+ F  + H+E + VF
Sbjct: 375 PQTFAKDARVLV-DAGFKLVRVTPVDQFVWSPHIELVGVF 413