Pairwise Alignments

Query, 498 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 449 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  234 bits (596), Expect = 6e-66
 Identities = 154/475 (32%), Positives = 247/475 (52%), Gaps = 45/475 (9%)

Query: 18  EAAPESPDRVLPEGWLAVESLDIDAQGIARRPDGKVVFIEGALPFEQVSVNVHRKKNNWE 77
           +A P S  ++  +   +V  LD    GIA+   GKVVFI GALP E V   +  +K N+ 
Sbjct: 6   KAKPNSSKQLSAKQSFSVHQLDHLGAGIAQH-QGKVVFIPGALPNETVQAQLTEQKKNYA 64

Query: 78  AGTVTAIHRESSQRVRPGCPHFGLHAGACGGCKMQHLHEAAQVAVKQRVLEDNLWHLGKV 137
              +  +   S++RV P CPH+     +CGGC +QH+  A Q   K   L D +      
Sbjct: 65  RAKLIKVETPSAERVTPLCPHYQ----SCGGCDLQHMSLAGQREHKSAALVDIMAKFAGA 120

Query: 138 RAETLMRPIEGPAWGYRHRARLSVRHVHKKGEVLIGFHERKSRYVADMQVCPVLPPHVSA 197
              ++   + G  W YR RARL+        ++ +GF    S  V  +  C VL   ++ 
Sbjct: 121 EGNSVPA-LTGEGWHYRRRARLATLFDKNTKQLSLGFRASSSNQVVPIDSCLVLAKPLAD 179

Query: 198 MLMPLRELIFGMDARETCPQIELASGDDVTALVLRHLEPLSEDDLARLRAFGARHGVQWW 257
           ++ P  +L+  + A+ +   +EL   D+    V+R  +PL++ D+A+L  F  +H +   
Sbjct: 180 LIAPFAKLLNQLAAKSSLGHVELIDADNGHFAVIRITKPLNDKDMAKLAQFAEQHQIHIC 239

Query: 258 LQAKGPD-----------TVKLLDEGGEVLSYALPEFGITMPFKPTDFTQVNPFINRVLV 306
           LQ    +             +LLD+  +    A P   +++ F P +F QVN  IN+ +V
Sbjct: 240 LQDNNGEFHGVNGTLLLPVYQLLDDNAD----ATP---VSLTFTPGNFVQVNAQINKTMV 292

Query: 307 VRALRLLDARADERVIDWFCGLGNFTLPIATTAGEVLGIEGSEALVARSRENLAGNQAGR 366
            +AL  L  +  ER++D FCG+GNF+LP+A    EV+G+EG   +V+++REN A N    
Sbjct: 293 AQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAAN---- 348

Query: 367 DRPLAPTTFAARNL-FEMTPELLVADGVAQKWLVDPPREGAFALAKAIADLHQNPALRGG 425
              L+  TF   +L  +++ E  +  G   K L+DP R GAF   + +  +         
Sbjct: 349 --GLSNLTFYHGDLSADLSCEPWM--GKIDKLLLDPARAGAFESLQWLKKM--------- 395

Query: 426 WTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVTAGVVNMFAHTAHVESMAVFEL 480
              P+++VYVSCNPA+LARD+ +L+ + GY+    G+++MF  T H+E+MA+FEL
Sbjct: 396 --KPRQVVYVSCNPASLARDSAVLL-ERGYKLQKLGLIDMFPQTHHIEAMALFEL 447