Pairwise Alignments

Query, 496 a.a., RND efflux system, outer membrane lipoprotein CmeC from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 536 a.a., outer membrane efflux protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  336 bits (861), Expect = 1e-96
 Identities = 208/515 (40%), Positives = 283/515 (54%), Gaps = 60/515 (11%)

Query: 21  AIGLTLLAAAALSACSFIPKYERPE--------------------APVASQFPGPQPAAA 60
           A+ LTL   + +  C+  P+Y RP                     A VA+Q P     A 
Sbjct: 10  ALALTL---SVVGGCTLAPEYRRPAPAMPSAWNAGQDVAPGAGQVAQVAAQAPDATAPAG 66

Query: 61  AD-------AKTGADVA-----WREFIGDAKLRELIALALKNNRDLRVATLNIEQVRAQY 108
           +        A TGA  A     WR+ + DA +  L+ +AL +NRDLRVA L IE+ RAQ+
Sbjct: 67  SSGAFAHSGAPTGAQPAMQTPDWRQVVVDAPMARLVDVALSSNRDLRVAVLQIEKARAQH 126

Query: 109 QIRRADQFPTIGLAATGNR-------QPDGNGGIQSTYSVGLALSTWEIDFFGRLGALKE 161
            I RAD FP I  +  GN         P G G +   Y+VG+  S +E+D FGR+ +LKE
Sbjct: 127 AIARADLFPHIDASGAGNAGRTAQSLSPTGEGYVSHAYTVGVGFSAYELDLFGRVRSLKE 186

Query: 162 AALAQYLASEEARHAAQTSLVAAVASTWLSLQANDELLVLTERTVATREDSLRLSKLRFD 221
            AL ++L+++ A  + Q +LVA V   +L+L A+ E L L    + T + S  + + R+ 
Sbjct: 187 QALERFLSTDAAARSVQLTLVAEVGQAYLTLVADREQLALAREILETEQASFEVVQSRYG 246

Query: 222 NGATSALDLRQAESLTAAAQSALAQQRRLRALDINALTLLVGQAPPAELLPVPPTLPAPS 281
           +G    LD+ +A +    A+  +A        D NAL LL+G        PV P +    
Sbjct: 247 HGIAGELDVARARTTVDTARVNVAAAEAKVTADENALALLLGT-------PVTPDM---- 295

Query: 282 ANANQVVVPTAPVPAATMLREVPAGLPSDLLTRRPDIRQAEQQLIAANANIGAARAAFFP 341
                  VP   +     L +VPAG+PS++LTRRPD+  AE  L AANANIGAARA FFP
Sbjct: 296 -------VPARRLADVVPLADVPAGVPSEVLTRRPDVVAAEHALKAANANIGAARAQFFP 348

Query: 342 RISLTASAGTASSSLSGLFKDGSWGFTLAPQALLPIFDAGRNRANLDSSNAGRDIAVAQY 401
           RI LTAS G AS+ +  LF+ G+  ++  PQ  LPIF AG  RA ++++ A RDI VAQY
Sbjct: 349 RIGLTASYGNASNDMENLFRAGAHTWSFVPQVTLPIFHAGAIRAGVETAEADRDIYVAQY 408

Query: 402 EKAIQTAFREVADALAGSATLGDQLSAQQLQATAEAERFRLAELRYRNGVASFLDVLDAQ 461
           EKA+QTAFREV+D LA   +L  Q  AQ     A A  + LA  RY +G+A +LD LDAQ
Sbjct: 409 EKAVQTAFREVSDTLAQGRSLAVQTGAQTSLVEATATSYSLASKRYESGIAGYLDKLDAQ 468

Query: 462 RSLFATQQALAQTRLAQQQNQVNLYKALGGGWSGQ 496
           RS    +Q L    LA+Q N++ L+KALGGGW G+
Sbjct: 469 RSYAVARQNLIAMHLARQNNRLTLFKALGGGWRGE 503