Pairwise Alignments

Query, 1095 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  132 bits (333), Expect = 1e-34
 Identities = 101/400 (25%), Positives = 187/400 (46%), Gaps = 35/400 (8%)

Query: 706  GMVRTFTDVSSYMQAQEALRDQRQRLAWVLEATRPGIWENNMVDNVLTVNERWAEMLGYT 765
            G++  + DV+   ++ E LR   +R    ++A   G+W+  +    +  N  +  MLGY 
Sbjct: 512  GLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYYSMLGYK 571

Query: 766  LRELQPMRAETWEALVQPDDLKRADQIREQHIAGLLPYYECDIRMRHKAGHWIWVNTRGR 825
              E  P      + L  PDD  R ++ R Q++   +  YE + R+  K   + WV +RGR
Sbjct: 572  PNEF-PALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNSSYHWVLSRGR 630

Query: 826  VHKRDAQDRALFMSGTHLDITERVAAQEQVKALNASLEQRVSARTAELERSMRDMEAISY 885
            V +     +   M GTH DIT   + +       A LE +  A  A L +S         
Sbjct: 631  VVEFTTDGQPKRMVGTHKDITRHKSNEV------ALLEAKQDAELANLYKS-----EFLA 679

Query: 886  SIAHDLRAPLRSVNGFASIVLEDEADRLSPTGRDMFERIARSSRNMGQMITDMLELLRVV 945
            +++H++R P+ ++ G   +    +   L+   +D  E+   S++++ ++I D+L+  ++ 
Sbjct: 680  NMSHEIRTPMNAIIGMLQLA---QRTSLTAQQKDYLEKAGFSAQSLLRIINDILDFSKIE 736

Query: 946  --RVDLEPVPVDMHALAQSVVEALSSQASQARIDIQAMPPA------MGDATLLRQVFSN 997
              +++LE VP  +  +    ++  + +A +  +++    P        GD   L QV  N
Sbjct: 737  AGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDPLRLGQVLIN 796

Query: 998  LIDNGLKYSRHLAQPELAVGF-DSRQR------AYFVRDNGMGFDMAHAEKLFGLFQRLH 1050
            L+ N +K+++     E+ +G  D  +R       ++VRD G+G      EKLF  F +  
Sbjct: 797  LLSNAVKFTQ---SGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEKLFDAFAQAD 853

Query: 1051 AGS--NVPGMGVGLAIVSRIVERHGGRVWAESAPGEGATF 1088
              +     G G+GL+I   +V   GG++  +S  G G+TF
Sbjct: 854  GSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTF 893