Pairwise Alignments

Query, 299 a.a., Transmembrane regulator protein PrtR from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 278 a.a., transmembrane transcriptional regulator (anti-sigma factor) from Herbaspirillum seropedicae SmR1

 Score =  223 bits (567), Expect = 5e-63
 Identities = 135/298 (45%), Positives = 173/298 (58%), Gaps = 45/298 (15%)

Query: 11  PPVTEADLHAFVDGRLPAERQVEIAAYLAARP---EDAQRLEAYRAQKRKLHALLDPVLD 67
           P + E DLHAF DG+LPA R  EIAA+L   P   E A+++  +R QKR LHA  DPVL+
Sbjct: 4   PAIPEEDLHAFADGQLPAARASEIAAWLEQDPTQAEAAEQVRDWRWQKRALHAHFDPVLE 63

Query: 68  EQPPQRL----LKSARPRAVPQTP------WYLQRLAAGIAIAVISGATGWGLRGGLPAG 117
           E  P RL    L  A  +  P+ P      W+  R+AA + +++ SG  GW L       
Sbjct: 64  EALPPRLAAAVLAGANHQEQPRAPAANAARWW--RMAAMLLLSMASGVGGWYLHDI---- 117

Query: 118 GDDAGRMAAAAPAERGLTLASAGGFAQRAAVAHAVYSPDARRPVEVDAAHEDQLVAWLSK 177
           GDD       AP             A++AAVAHAV+S D RRPVEV A  E  LV WLS+
Sbjct: 118 GDDGRHARVQAPLV----------LARQAAVAHAVFSVDLRRPVEVGADQEQALVTWLSR 167

Query: 178 RMGAPMKPPHLQAQGYTLEGGRLLPGGQGPVAQFMYRNELGSKLTLYVSNDVADVGSAAG 237
           R+G  ++ P L   GY L GGRLLPG  GPVAQFMY++  G +LTLYVS++         
Sbjct: 168 RLGTSLRAPKLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHE--------- 218

Query: 238 PDKALQAGVKNTDTAFRFAREGAVNVFYWVDGPFGYALSSDADRSVLAQVSAEVYRQL 295
                   V+N +T FRFA+EG VNVFYW+DG FGYALS    R+ L+++++ VY QL
Sbjct: 219 -------QVQNRETGFRFAQEGKVNVFYWIDGQFGYALSGGIARAELSRIASSVYEQL 269