Pairwise Alignments

Query, 103 a.a., putative lipoprotein from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 278 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 45.8 bits (107), Expect = 4e-10
 Identities = 24/71 (33%), Positives = 41/71 (57%)

Query: 26  RDQQTVGAYVDDATITTRVKAAYAKDPTVAATSINVETLNGTVQLSGFAKSAGEKSMAER 85
           R  +T    + D+ IT ++K+++     +  + I+V T NG V L+G   S  E+S+A  
Sbjct: 201 RKNETEIHNISDSWITAKIKSSFMYSNNINGSDIDVSTNNGVVILTGKVNSGIEQSLAVE 260

Query: 86  LARDVNGVKSV 96
            A+++ GVKSV
Sbjct: 261 TAQNIRGVKSV 271



 Score = 42.0 bits (97), Expect = 5e-09
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 27  DQQTVGAYVDDATITTRVKAAYAKDPTVAATSINVETLNGTVQLSGFAKSAGEKSMAERL 86
           +  + G   DD  IT  +++    +  V      V T +G V L+G A++   K++  RL
Sbjct: 113 NSNSFGDKFDDTNITAAIRSKLQWNKDVDDVVTEVITKSGRVTLNGIAENQNAKNVIHRL 172

Query: 87  ARDVNGVKSVKNDIVV 102
           A +  GVKSV N++ V
Sbjct: 173 ALNTRGVKSVTNNLKV 188



 Score = 40.4 bits (93), Expect = 1e-08
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 6   ALLAIAAATAVVQVTGCAVARDQQTVGAYVDDATITTRVKAAYAKDPTVAATSINVETLN 65
           A+L I +A   V     A      T    +DD    +++  +YA  P + A  + V    
Sbjct: 13  AILLILSALQPVSAADTAA-----TATKAMDDVRQESQIATSYALSPYLRANDLKVTVQK 67

Query: 66  GTVQLSGFAKSAGEKSMAERLARDVNGVKSVKNDIVV 102
           G   L+G       K +A  +A  V+G+K V N IVV
Sbjct: 68  GKAVLTGKVDEKISKELAGEIALGVSGIKDVDNKIVV 104