Pairwise Alignments
Query, 1040 a.a., Excinuclease ABC subunit A from Hydrogenophaga sp. GW460-11-11-14-LB1
Subject, 970 a.a., excinuclease ABC subunit UvrA from Synechocystis sp000284455 PCC 6803
Score = 955 bits (2468), Expect = 0.0
Identities = 511/1019 (50%), Positives = 663/1019 (65%), Gaps = 81/1019 (7%)
Query: 44 LSVRGARTHNLKNIDLDIPKHALVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 103
+ +RGAR HNLKN++LD+P+ L+V TG+SGSGKSSLAFDT++AEGQRRYVESLSAYARQ
Sbjct: 7 IRIRGARQHNLKNVNLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQ 66
Query: 104 FLQLMDKPDVDLIEGLSPAIAIEQKATSHNPRSTVGTVTEIHDYLRLLFARAGTPHCPDH 163
FL +DKPDVD IEGLSPAI+I+QK+TSHNPRSTVGTVTEI+DYLRLLF RAG+PHCP
Sbjct: 67 FLGQLDKPDVDSIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGSPHCPHC 126
Query: 164 HLPLTSQSVAQMVDTVLALPEGTRLMILAPVAREKKGEFTELFADMQAQGYVRFRVDGAV 223
+ Q++ QM D V+ LP+ T+ ILAPV + KKG +L + + +QG+VR R++G V
Sbjct: 127 QRNIAPQTIDQMCDRVMELPDRTKFQILAPVVKGKKGTHVQLLSSLVSQGFVRVRINGEV 186
Query: 224 LEAEALPALKKTEKHNIDVVIDRIKVRADGEEEGVNPLRQRLAESFEAALRLADGRAIAV 283
E LKK + H I++VIDR+ ++ +G L++RL +S L+ A+G AI
Sbjct: 187 RELSDNIELKKNQAHTIEIVIDRL-IKKEG-------LQERLVDSLSTCLKQAEGTAIID 238
Query: 284 EMD-------------------AAEAGAA-----PREHGFSARFACPLCHYTVGELEPRL 319
+D AAE G A P+E FS FACP + EL PRL
Sbjct: 239 ILDKPTLAVLDGGKKDDKEALKAAENGQAYHAELPKEIIFSENFACPEHGAVMDELSPRL 298
Query: 320 FSFNSPMGACPTCDGLGHTEFFDPARVVAFPSLSLASGAIKGWDRRNGYYFAMIESLAAH 379
FSFNSP GACP C G+G F P V+ P + ++ N YY +++ SL H
Sbjct: 299 FSFNSPYGACPDCHGIGFVRSFCPDLVIPDPEKPVYVAIAPWSEKDNSYYLSLLYSLGQH 358
Query: 380 YRFNAEAPWESLPDAVQQVLLYGSGEDEVKFSYALESGERAGKKVSKKHPFEGIVRNFER 439
+ F + PW+ L ++++LYG+ E+E+ F E R K F G + ++
Sbjct: 359 FDFQLQTPWKKLTKEQKEIILYGT-EEEIWF----EGESRYRNKQGYYRRFAGALNILQK 413
Query: 440 RYRETDSAAVREELARYRAVQACPECAGSRLRREARHVFVGEGEQKQPIYKISHVTLGEA 499
Y ET+S A++++L +Y Q C C G RL+ EA V +G+ I ++ V + +
Sbjct: 414 NYDETNSDAIKQKLEKYIINQPCHTCGGKRLKPEALAVKLGQ----YNINNLTSVPIRQT 469
Query: 500 LAYFQKLELHGAKGDIAARVINEIRQRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLAS 559
L + LEL + I + EI+ RL+FL DVGL+YL+LDR+A TLSGGEAQRIRLA+
Sbjct: 470 LERIENLELTSRQAMIGELALKEIKARLQFLLDVGLDYLTLDRAAMTLSGGEAQRIRLAT 529
Query: 560 QIGSGLTGVMYVLDEPSIGLHQRDNDRLIATLQHLRDLGNTVLVVEHDEDMIRTADHVID 619
QIGSGLTGV+YVLDEPSIGLHQRDN+RL+ATL LRDLGNT++VVEHDED IR AD+++D
Sbjct: 530 QIGSGLTGVLYVLDEPSIGLHQRDNNRLLATLTKLRDLGNTLIVVEHDEDTIRHADYIVD 589
Query: 620 MGPGAGVHGGRVMAQGTCEQVMATPDSLTGQYLGGTRQIAVPARRTPWLPVVKKGEAPKA 679
+GP AG+HGG ++ QG + ++ SLTG YL G IA P R + G K
Sbjct: 590 IGPKAGIHGGEIVCQGDFQTLLKNQRSLTGAYLSGREAIATPEER-------RNGNGAK- 641
Query: 680 APTKPRFPPSPAAERRAAREAAHQATLGELQEIRVVNARGHNLKGASVAFPVGLLTCVTG 739
+ + +NL+ V P+G L CVTG
Sbjct: 642 --------------------------------LTLQGCCHNNLRNIDVTIPLGKLVCVTG 669
Query: 740 VSGSGKSTLVNDTLYAAVARTLYRSHDEPAAHDAIEGIEHFDKVINVDQSPIGRTPRSNP 799
VSGSGKSTLVN+ L+ A+ L R P I G++ DKVI +DQSPIGRTPRSNP
Sbjct: 670 VSGSGKSTLVNELLHPALQHYLSRQVAFPKNLGEITGLQAIDKVIVIDQSPIGRTPRSNP 729
Query: 800 ATYTGLFTGIRELMAEMPTARERGYGPGRFSFNVAGGRCEACQGDGVVKVEMHFLPDVYV 859
ATYTG+F IRE+ + A+ RGY PG+FSFNV GGRCEAC G GV +EM+FLPDVYV
Sbjct: 730 ATYTGIFDSIREIFTQTIEAKARGYKPGQFSFNVKGGRCEACAGQGVNVIEMNFLPDVYV 789
Query: 860 PCEVCHGQRYNRETLDVQYKGRNIAQILDMTVEQSHAFFSAVPTLHRKLQTLLDVGLSYI 919
C+VC G RYNRETL V+YKG +IA +L MT E++ F +P +LQTL+DVGL YI
Sbjct: 790 QCDVCKGARYNRETLQVKYKGHSIADVLAMTTEEALTVFENIPRAVNRLQTLVDVGLGYI 849
Query: 920 QLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIELLLKVLHQLRDA 979
+LGQ A TLSGGEAQRVKLA ELS+R TG+TLY++DEPTTGL F D+ LL VL +L D
Sbjct: 850 KLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLSFYDVHHLLNVLQRLVDK 909
Query: 980 GNTIVVIEHNLDVIKTADWVIDMGPEGGSGGGTVVAQGTPETIAAHPDSHTGRYLRRLL 1038
GN+++VIEHNLDVI+ +DW+ID+GPEGG GG ++ GTPET+A HP S+TG+YL ++L
Sbjct: 910 GNSVLVIEHNLDVIRCSDWIIDLGPEGGDRGGKIMVAGTPETVAQHPSSYTGKYLAKVL 968
Score = 132 bits (331), Expect = 2e-34
Identities = 81/197 (41%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 462 CPECAGSRLRREARHVFVGEGEQKQPIYKISHVTLGEALAYFQKLELHGAKGDIAARVIN 521
C C G+R RE V + I + +T EAL F+ + R +N
Sbjct: 791 CDVCKGARYNRETLQVKY----KGHSIADVLAMTTEEALTVFENIP----------RAVN 836
Query: 522 EIRQRLKFLNDVGLNYLSLDRSAETLSGGEAQRIRLASQIGSGLTG-VMYVLDEPSIGLH 580
RL+ L DVGL Y+ L + A TLSGGEAQR++LAS++ TG +Y++DEP+ GL
Sbjct: 837 ----RLQTLVDVGLGYIKLGQPAPTLSGGEAQRVKLASELSRRATGKTLYLIDEPTTGLS 892
Query: 581 QRDNDRLIATLQHLRDLGNTVLVVEHDEDMIRTADHVIDMGPGAGVHGGRVMAQGTCEQV 640
D L+ LQ L D GN+VLV+EH+ D+IR +D +ID+GP G GG++M GT E V
Sbjct: 893 FYDVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWIIDLGPEGGDRGGKIMVAGTPETV 952
Query: 641 MATPDSLTGQYLGGTRQ 657
P S TG+YL Q
Sbjct: 953 AQHPSSYTGKYLAKVLQ 969
Score = 62.0 bits (149), Expect = 2e-13
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 708 ELQEIRVVNARGHNLKGASVAFPVGLLTCVTGVSGSGKSTLVNDTLYA-----------A 756
E IR+ AR HNLK ++ P L TGVSGSGKS+L DT++A A
Sbjct: 3 EQNSIRIRGARQHNLKNVNLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSA 62
Query: 757 VARTLYRSHDEPAAHDAIEGIEHFDKVINVDQSPIGRTPRSNPATYTGLFTGIREL 812
AR D+P D+IEG+ I++DQ PRS T T ++ +R L
Sbjct: 63 YARQFLGQLDKPDV-DSIEGL---SPAISIDQKSTSHNPRSTVGTVTEIYDYLRLL 114
Score = 60.5 bits (145), Expect = 6e-13
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 15 TGAASRETPSVGEPSPRYLGAALRHASAFLSVRGARTHNLKNIDLDIPKHALVVITGLSG 74
TGA ++ P R G + L+++G +NL+NID+ IP LV +TG+SG
Sbjct: 618 TGAYLSGREAIATPEERRNGNGAK-----LTLQGCCHNNLRNIDVTIPLGKLVCVTGVSG 672
Query: 75 SGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLSPAIAIEQKATSHNP 134
SGKS+L + L+ Q Y+ A+ + ++ ++ + I I+Q P
Sbjct: 673 SGKSTLVNELLHPALQ-HYLSRQVAFPKNL------GEITGLQAIDKVIVIDQSPIGRTP 725
Query: 135 RSTVGTVTEIHDYLRLLFAR 154
RS T T I D +R +F +
Sbjct: 726 RSNPATYTGIFDSIREIFTQ 745