Pairwise Alignments

Query, 980 a.a., DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  303 bits (777), Expect = 2e-86
 Identities = 227/700 (32%), Positives = 356/700 (50%), Gaps = 48/700 (6%)

Query: 4   LVIAEKPSVAQDIVRALTPVAGKFDKHDDHFENDKYVVTSAVGHLVEIAAPEQFDVKRGK 63
           L IAEKPS+ + I   L     K + + +    D   VT  +GHL+E A P+ +  +  +
Sbjct: 27  LYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGD--CVTWCIGHLLEQAEPDAYSPEYKQ 84

Query: 64  WSFAHLPVLPPYFELKPIDKTKSRLGAVVKLVKRKDVTRLINACDAGREGELIFRLIEQY 123
           W  AHLP++P  ++L P    KS+L  V +L+K+   + L++A D  REG+L+   +  +
Sbjct: 85  WQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQ--ASSLVHAGDPDREGQLLVDEVISH 142

Query: 124 AGGLKNGSYQSLGKPVQRLWLQSMTPAAIRDGFEQLRSDEQMRGLADAARSRSEADWMVG 183
           A      S   L    QRL +  + P A+R    QLRS+++   LA +A +RS ADW+ G
Sbjct: 143 A----KVSASKLAS-TQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYG 197

Query: 184 INGTRAMTAFNSRDGGFFLTTVGRVQTPTLSIVVEREEKIRAHRSRDYWEIHASFLAEAG 243
           +N TRA T    + G   + +VGRVQTP L +VV R+  I     +D++E+ A    + G
Sbjct: 198 LNMTRAYTLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKG 257

Query: 244 E-YPGKWFDPNFKKPTGDDADAELRADRVWSQREALAIAEAVRGKAASVKEES-KPTTQA 301
           E +  KW      +P  D+        RV S+R A  +   + GK A V+  S K   QA
Sbjct: 258 ESFCAKWQPSEACQPYMDE------EGRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQA 311

Query: 302 SGLLYDLTSLQREANGRFGFSAKTTLQLAQSLYERHKALTYPRTDSRALPEDYLPTVKQT 361
             LLY L++LQ +   RFG SAK  L  AQSLYERHK +TYPR+DSR LP++ L  V   
Sbjct: 312 PPLLYSLSALQIDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDV 371

Query: 362 FDMLAGSGMKHLAPHAKTAIDNGYIRPSKRIFDNSKVSDHFAIIPT--LQAPSGLSEAEQ 419
              ++ +     AP       +  +    + +D+SKV  H AI+PT    A S L++ E+
Sbjct: 372 LSAVSAN-----APELLEGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRER 426

Query: 420 KLYDLVVRRFLAVFFPSAEFMVTTRITSSV-GHHFKTEGKVLVKPGWMAVYGKEAAE--D 476
           +LY  + R++LA F+P+   +  T I   + G  F     V   PGW  ++   + E  +
Sbjct: 427 QLYLHIARQYLAQFYPN-RLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDE 485

Query: 477 VVDAKEGDKGQN--LVPVREGETVRTETVEPKGLKTKPPARYSEATLLGAMEGAGKLVDD 534
             + +E D  Q   L  + +G+  R    E    +T+PP  +++ATLL AM G  + V  
Sbjct: 486 AKEPQETDASQKTPLPALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSS 545

Query: 535 DELREAMQE-KGLGTPATRAAIIEGLLTEKYILREGREIIPTAKAFQLMTLLRGLGVEEL 593
            +++  +++  GLGT ATRA IIE L    +++R+G+ I+ +     L+  L     E  
Sbjct: 546 PDIKRILKDTDGLGTEATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASL----PEVA 601

Query: 594 SKPELTGEWEYKLAQMEHGQLSRAAFMGEIAAMTERMVKKAKEYDRDTIPGNYATLSTPC 653
           +  ++T  WE +L+ +   QLS   FM  +    E+++++A      ++P   A ++   
Sbjct: 602 TTADMTALWERQLSDICQRQLSYKGFMTPLVLELEKLIEQAAA----SLPTALAGVTAAG 657

Query: 654 PNCGGVVKXNYRRYTCTG---ADGNSEGCGFSFGKSPAGR 690
           P      K ++R     G   A G S G G     SP+G+
Sbjct: 658 P------KRSFRGRAGKGKGRAPGASAGRGRKSRSSPSGK 691