Pairwise Alignments

Query, 320 a.a., Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 317 a.a., ABC transporter substrate-binding protein from Azospirillum brasilense Sp245

 Score =  301 bits (771), Expect = 1e-86
 Identities = 161/313 (51%), Positives = 216/313 (69%), Gaps = 7/313 (2%)

Query: 11  AAVAALGMASPLLAQAQNKVNLGVAIPAATHSFAAGLVYWANEAKKELEKD-PNIKVTIK 69
           AA+AA  M +P+   AQ K+ +GV+IPAATH +A GL + A +A+K LEK  PN+ V I 
Sbjct: 9   AALAAGLMVAPVTGWAQQKIKMGVSIPAATHGWAGGLNWHAQQAEKRLEKQYPNLDVVIV 68

Query: 70  TASGAPEQANQLQDLVTATKIDSLVILPFESAALTRPVQQVKAKGVYVTVVDRGLTDTSA 129
           TA     QAN L+DLV+  +ID+LVILPFESA +T PV+ VK  G +VTVVDRGLTD S 
Sbjct: 69  TARDVGRQANDLEDLVSVQRIDALVILPFESAPMTDPVRAVKQAGKFVTVVDRGLTDPSI 128

Query: 130 QDAYVSGDNTAFGKVPAEYLAKALNGKGNIVALRGIPTTIDNERMDAFNAVMKNHPG--I 187
           QD YV+G+N   G+V A ++ + + GKG+IV LRGIPT IDN+R+DAF   MK   G  I
Sbjct: 129 QDLYVAGNNPQMGEVSARFMKEKMGGKGDIVVLRGIPTVIDNQRVDAF---MKEIEGTQI 185

Query: 188 KVLDAKHGNWNRDDAFKVMQDFLTRFKEIDAVWAADDDMAFGVLRAIEQAKRKDIKIVFG 247
           KVL  ++ NWNRDD FKVMQDFL+RF +IDAVWA DDD+A GV+ A++QA R+    + G
Sbjct: 186 KVLGMQYANWNRDDGFKVMQDFLSRFPKIDAVWAQDDDIALGVIEAVKQAGREKEMFILG 245

Query: 248 GAGAKAMVKTLMDGTNPLIQANVSYSPKFLYDAIKMTALARKKGEKLPASTIVPSVLITK 307
           GAG K M+K +MD  + L+ A+V Y P  + +A+++TA    +   +    I+ + L+T 
Sbjct: 246 GAGMKDMIKRVMD-KDVLVPADVLYPPAMIAEAMEITAKHLVEKAPIQKEYIIEATLVTP 304

Query: 308 ANAKDFYFPDSPF 320
            NA  +Y+PDSPF
Sbjct: 305 ENAAKYYYPDSPF 317