Pairwise Alignments

Query, 692 a.a., ATP-dependent DNA helicase Rep from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  358 bits (918), Expect = e-103
 Identities = 253/673 (37%), Positives = 354/673 (52%), Gaps = 42/673 (6%)

Query: 4   GLNIAQLEAVNHLAGPCLVLAGAGSGKTRVITHKIGRLIQA-GLAADRIAAITFTNKAAA 62
           GLN  Q +AV H   P L++AGAGSGKT V+T +I  L+ A G+   +I AITFTNKAAA
Sbjct: 22  GLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAA 81

Query: 63  EMRERAAQLVGRDARKVLICTFHALGVRLLRDDGEVL-GLKKQFSILDTDDITSML---- 117
           EMRER   LVG  AR + + TFH+  VR+LR+   ++ GL   FSI D DD   +L    
Sbjct: 82  EMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVG 141

Query: 118 KDCGGTTDTATARGWQWAISAWKGAGMNAAQCLA---QAKDEDERVTATIMARYEERLVA 174
           +D G      + R    AIS  K   ++  Q LA   +  D+  R  A++   Y+ RL A
Sbjct: 142 RDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRRLRA 201

Query: 175 YQSVDFDDLITLPLKLLREHEDVRARWQKKMGHVLVDEYQDTNATQYELLKLLVGER--- 231
             ++DFDDLI   + +L+    +   ++++  HVLVDEYQDTN  QY L++ LVG     
Sbjct: 202 ANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSND 261

Query: 232 ----GRFTAVGDDDQSIYGWRGATLDNLKKLPQDYPELKVIKLEQNYRSTSAILRAANNV 287
               G    VGD DQSIY +RGAT+ N++   +DYP+ + I LEQNYRST  IL AAN+V
Sbjct: 262 GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSV 321

Query: 288 IGPNPKLFPKTLWSDLGEGEPVRVVDADNEEHEAERAVARILSLRASSQHKEWRDFAILY 347
           I  N     K LW+D G GE +    ADN EH+  R VA  +   A      + D A+ Y
Sbjct: 322 IARNAGRREKRLWTDAGAGELIVGYVADN-EHDEARFVAEEIDALAEGSEITYNDVAVFY 380

Query: 348 RANHMARPFEQSLRRAQVPYKVSGGQSFFDKAEIRDLCAWLRLLVNNNDDPAFLRSATTP 407
           R N+ +R  E+ L RA +PYKV GG  F+++ EIRD+ A+LR+L N  D  +  R   TP
Sbjct: 381 RTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTP 440

Query: 408 KRGIGHTTLQQLGAFATQYKLSLFEALFANSLGTA--LPPRAVATLHEFGRAVNDLEYRA 465
           +RGIG      +  +A    +   +AL A + G    L  RA   +  F    ++L  R 
Sbjct: 441 RRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRL 500

Query: 466 RHTLGHEAARAFLTEWLKDIDYEKHLYDSEDNEKVAAARWTNVMDFCDWVAGRCGGKLEE 525
              LG       +   L+   Y + L  S D +++  AR  N+ +    VA       E 
Sbjct: 501 DDDLGE-----LVEAVLERTGYRRELEASTDPQEL--ARLDNLNELVS-VAHEFSTDREN 552

Query: 526 EDGVKIETE----RKSLLEVVQTIALLSTLSE-REQDQNVVTLSTLHASKGLEWPHVMLV 580
              +  + E       L + ++ ++L++   E  E    VVTL TLH +KGLE+P V + 
Sbjct: 553 AAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVT 612

Query: 581 GVNEGLLPFKMEEEPGQSDAQAADMAQRLQEERRLMYVGITRAQRTLAVSWLKRRKKGRE 640
           G  +G+ P            +A D    L EERRL YVGITRA++ L VS    R    +
Sbjct: 613 GWEDGMFP----------HMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQ 662

Query: 641 SIPGLASRFIKEM 653
            +    SRF++E+
Sbjct: 663 PMLNPESRFLREI 675