Pairwise Alignments

Query, 692 a.a., ATP-dependent DNA helicase Rep from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 671 a.a., ATP-dependent DNA helicase Rep (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  540 bits (1392), Expect = e-158
 Identities = 309/659 (46%), Positives = 422/659 (64%), Gaps = 31/659 (4%)

Query: 5   LNIAQLEAVNHLAGPCLVLAGAGSGKTRVITHKIGRLIQ-AGLAADRIAAITFTNKAAAE 63
           LN AQ +AV++++GPCLVLAGAGSGKTRVI +KI  L+Q  G  A  IAA+TFTNKAA E
Sbjct: 3   LNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAARE 62

Query: 64  MRERAAQLVGR-DARKVLICTFHALGVRLLRDDGEVLGLKKQFSILDTDDITSMLKDCGG 122
           M+ER AQ +GR +AR + I TFH LG+ +++ + +VLGLK  FS+ D  D  ++LK+   
Sbjct: 63  MKERVAQSMGRKEARGLWISTFHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQ 122

Query: 123 TT---DTATARGWQWAISAWKGAGMNAAQCLAQAKDEDERVTATIMARYEERLVAYQSVD 179
                D    +    AIS WKG  +   Q    AKDE +++ A +  RY + + AY ++D
Sbjct: 123 KELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQQLFALLYQRYAQHMKAYNALD 182

Query: 180 FDDLITLPLKLLREHEDVRARWQKKMGHVLVDEYQDTNATQYELLKLLVGERGRFTAVGD 239
           FDDLI LP  LLR HE+VR RWQ K+ ++LVDEYQDTN +QYE++KLLVGER RFT VGD
Sbjct: 183 FDDLILLPTLLLRHHEEVRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVGERARFTVVGD 242

Query: 240 DDQSIYGWRGATLDNLKKLPQDYPELKVIKLEQNYRSTSAILRAANNVIGPNPKLFPKTL 299
           DDQSIY WRGA   NL  L +D+P+LK+IKLEQNYRS+  ILRAAN +I  NP ++ K+L
Sbjct: 243 DDQSIYSWRGAKPQNLVLLGKDFPKLKLIKLEQNYRSSQRILRAANILIANNPHVYDKSL 302

Query: 300 WSDLGEGEPVRVVDADNEEHEAERAVARILSLRASSQHKEWRDFAILYRANHMARPFEQS 359
           +S+L  GEP+RV+ A NEE EAER VA I+  +   +  ++ D+AILYR NH +R  E++
Sbjct: 303 FSELAYGEPMRVLFAANEEQEAERVVAEIVRHKFVGR-TQFGDYAILYRGNHQSRLLERA 361

Query: 360 LRRAQVPYKVSGGQSFFDKAEIRDLCAWLRLLVNNNDDPAFLRSATTPKRGIGHTTLQQL 419
           L   ++PYK+SGG SFF +AEI+D+  +L+L+VN +DD AFLR    PKRGIG +TL++L
Sbjct: 362 LMTNRIPYKLSGGTSFFSRAEIKDIMGYLKLVVNPDDDNAFLRVVNLPKRGIGPSTLERL 421

Query: 420 GAFATQYKLSLFEALFANSLGTALPPRAVATLHEFGRAVNDLEYRARHTLGHEAARAFLT 479
           G FA +  +S+FEA+FA  L   LPP A++ L++FGR + D    A      EA +    
Sbjct: 422 GNFANEKHISMFEAIFAPELNHHLPPNAMSALYQFGRFIVDTGEHADRGEPVEAVK---- 477

Query: 480 EWLKDIDYEKHLYDSEDNEKVAAARWTNVMDFCDWVAGRCGGKLEEEDGVKIETERKSLL 539
           + ++ I+YE +LY++  + K A  R  N+ +   WV     G   EE          +L 
Sbjct: 478 QLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELEEP--------MTLP 529

Query: 540 EVVQTIALLSTLSEREQDQ--NVVTLSTLHASKGLEWPHVMLVGVNEGLLPFKMEEEPGQ 597
           EVV  + L   +    +D+  + V L TLHASKGLE+P V +VGV E +LP +   +   
Sbjct: 530 EVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILPHQTSIDEDN 589

Query: 598 SDAQAADMAQRLQEERRLMYVGITRAQRTLAVSWLKRRKKGRESIPGLASRFIKEMALD 656
            D           EERRL YVGITRAQR L  +  + R++  E++    SRF+ E+  D
Sbjct: 590 VD-----------EERRLAYVGITRAQRELWFTLCRERRQFGETMRCEPSRFLHELPQD 637