Pairwise Alignments

Query, 692 a.a., ATP-dependent DNA helicase Rep from Hydrogenophaga sp. GW460-11-11-14-LB1

Subject, 788 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  354 bits (909), Expect = e-102
 Identities = 247/668 (36%), Positives = 368/668 (55%), Gaps = 48/668 (7%)

Query: 5   LNIAQLEAVNHLAGPCLVLAGAGSGKTRVITHKIGRLIQAGLAADRIAAITFTNKAAAEM 64
           LN +Q  AV +  GP LV+AGAGSGKTRV+T+KI  L++ G     I A+TFTNKAA EM
Sbjct: 9   LNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREM 68

Query: 65  RERAAQLVGRD-ARKVLICTFHALGVRLLRDDGEVLGLKKQFSILDTDD----ITSMLKD 119
           ++R A+ VG + AR + + TFH++  R+LR + + +G   QF+I D+ D    I S++K+
Sbjct: 69  KDRIARQVGMERARYLWMGTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKE 128

Query: 120 CGGTTDTATARGWQWAISAWKGAGMN----AAQCLAQAKDEDERVTAT--IMARYEERLV 173
            G    T      Q  IS+ K   ++    AA   A   D   +V A   I  RY ER  
Sbjct: 129 MGLDEKTYKPGMVQARISSAKNHLVSPTGYAANKEAYEGDMAAKVPAVREIYTRYWERCR 188

Query: 174 AYQSVDFDDLITLPLKLLREHEDVRARWQKKMGHVLVDEYQDTNATQYELLKLLVGERGR 233
              ++DFDDL+     L R+  +V AR++++  +VLVDEYQDTN  Q+ ++  L  E  R
Sbjct: 189 QAGAMDFDDLLVYTYILFRDFPEVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTKENQR 248

Query: 234 FTAVGDDDQSIYGWRGATLDNLKKLPQDYPELKVIKLEQNYRSTSAILRAANNVIGPNPK 293
              VGDD QSIY +RGA +DN+    + YP  KV KLEQNYRST  I+ AAN++I  N +
Sbjct: 249 VCVVGDDAQSIYSFRGADIDNILYFTKVYPNTKVFKLEQNYRSTQTIVCAANSLIEKNER 308

Query: 294 LFPKTLWSDLGEGEPVRVVDADNEEHEAERAVARILSLRASSQHKEWRDFAILYRANHMA 353
              K ++S+   GEP+ V  A ++  E +    +I  LR    +  + DFAILYR N  +
Sbjct: 309 QIRKEVFSEKERGEPIGVFQAYSDVEEGDIVANKIAELRREHSY-GYADFAILYRTNAQS 367

Query: 354 RPFEQSLRRAQVPYKVSGGQSFFDKAEIRDLCAWLRLLVNNNDDPAFLRSATTPKRGIGH 413
           R FE++LR+  +PYK+ GG SF+ + EI+D+ A+ RL+VN ND+ AF R    P RGIG 
Sbjct: 368 RVFEEALRKRSMPYKIYGGLSFYQRKEIKDVIAYFRLVVNPNDEEAFKRIINYPARGIGD 427

Query: 414 TTLQQLGAFATQYKLSLFEALFAN-SLGTALPPRAVATLHEFGRAV----NDLEYRARHT 468
           TT+ ++ + AT+  +SL+ AL    S G  +       L  F   +     D   ++ + 
Sbjct: 428 TTVGKIISAATENGVSLWAALCEPLSYGLNINKGTHTKLQGFRELIEGFMTDQVDKSAYE 487

Query: 469 LGHEAAR--AFLTEWLKDIDYEKHLYDSEDNEKVAAARWTNVMDFCDWVAGRCGGKLEEE 526
           +G +  R    + +  +D   E +L   E+ E++       + DFC          L +E
Sbjct: 488 IGTDIIRRSGIINDVCQDTSPE-NLSRKENIEELV----NGMNDFC---------ALRQE 533

Query: 527 DGVKIETERKSLLEVVQTIALLSTL-SEREQDQNVVTLSTLHASKGLEWPHVMLVGVNEG 585
           +G        SL + +  IALL+   S++  D   +TL T+H++KGLE+ +V +VG+ E 
Sbjct: 534 EG----NPNISLTDFLSEIALLTDQDSDKADDGEKITLMTVHSAKGLEFKNVFVVGLEEN 589

Query: 586 LLPFKMEEEPGQSDAQAADMAQRLQEERRLMYVGITRAQRTLAVSWLKRRKKGRESIPGL 645
           L P  M            D  + L+EERRL YV ITRA+    +S+ K R +  +   G 
Sbjct: 590 LFPSGM----------VGDSPRALEEERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGS 639

Query: 646 ASRFIKEM 653
            SRF++++
Sbjct: 640 PSRFLRDI 647